Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0180
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45415| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_53102| Best HMM Match : CUB (HMM E-Value=3.3e-40)                   28   4.4  
SB_18787| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_45415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = +1

Query: 85  QPSPLNEKVLKAQXKKTQGKLLTXVLKMYDKDEPXEMGRSQ 207
           +P P N+K LK + KK + + L  + K+Y+KD+P + G  Q
Sbjct: 7   EPLP-NDKALKDKKKKLR-ETLERLQKLYEKDDPRKAGEIQ 45


>SB_53102| Best HMM Match : CUB (HMM E-Value=3.3e-40)
          Length = 644

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 286 TD*ACFTDS*YEIKWALLFSYC 221
           T+ AC ++S Y IKW +L +YC
Sbjct: 262 TNVACPSESSYHIKWLVLTAYC 283


>SB_18787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 636

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 313 QYKFLTTFCTILRPLXKYRCPRILPKPRLVQ*NLYXKRKLFTKKNPRELNHPG 471
           +YK   T    LR L K +  R LP P+ +  ++Y  + LF +K   + +H G
Sbjct: 102 RYKRFPTISANLRNLPKGKKTR-LPSPQYLLKDVYIFKDLFEEKQSSDDSHTG 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,525,505
Number of Sequences: 59808
Number of extensions: 213832
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)