Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0180
         (550 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   5.0  
AJ237706-1|CAB40347.1|  570|Anopheles gambiae putative 5'-nucleo...    23   5.0  
U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette...    23   6.6  
U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette...    23   6.6  
U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette...    23   6.6  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 368 RYLXRGRSIVQNVVRNLYCR-QRNIIQLNRLSM 273
           +YL  G+S+    V++L+C  Q N+   N L M
Sbjct: 114 KYLINGKSVQNKRVQDLFCSVQLNVNNPNFLIM 146


>AJ237706-1|CAB40347.1|  570|Anopheles gambiae putative
           5'-nucleotidase protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 327 DNILYNTAPPXQIPLPADITQAPXGXVKSI 416
           D   YNTA    + + AD+++ P   V+SI
Sbjct: 447 DEFRYNTAQVSGMTVVADLSKKPYERVQSI 476


>U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 285 VQLDDIXLPAIQVPDNILYNTAPPXQIPLPADITQ 389
           VQ DD+ +P++   +++L+         +PA + Q
Sbjct: 181 VQQDDLFIPSLTTREHLLFQAMLRMGRDVPASVKQ 215


>U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 285 VQLDDIXLPAIQVPDNILYNTAPPXQIPLPADITQ 389
           VQ DD+ +P++   +++L+         +PA + Q
Sbjct: 181 VQQDDLFIPSLTTREHLLFQAMLRMGRDVPASVKQ 215


>U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 673

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 285 VQLDDIXLPAIQVPDNILYNTAPPXQIPLPADITQ 389
           VQ DD+ +P++   +++L+         +PA + Q
Sbjct: 159 VQQDDLFIPSLTTREHLLFQAMLRMGRDVPASVKQ 193


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 438,666
Number of Sequences: 2352
Number of extensions: 7381
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)