Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0180
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical pr...    31   0.41 
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    30   0.95 
AF016449-7|AAG24000.2|  350|Caenorhabditis elegans Hypothetical ...    28   3.9  
AF003141-12|AAP68910.1|  946|Caenorhabditis elegans Hypothetical...    28   3.9  
AF003141-11|AAP68909.1| 1437|Caenorhabditis elegans Hypothetical...    28   3.9  
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    27   8.9  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    27   8.9  

>U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical
           protein F47E1.3 protein.
          Length = 594

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 207 LRSTHFXWLIFVIHFEDXC-QKFXLSFFXLCFQYFFVKWR 91
           L S +F   IF++  ++ C +KF   F  + F YF VKWR
Sbjct: 257 LFSPNFHQSIFMLSTQNNCVEKFSSLFLLIHFPYFRVKWR 296


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical
           protein K10C2.1 protein.
          Length = 2314

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +3

Query: 210 VKKWQYEKRRAHLISYYESVKHAQSVQLDDIXLPAIQVPDNILYNTAPPXQIPLPADITQ 389
           +K W Y++    L++    VK A  +   D   PA+Q+  N LYNT       +P D+T 
Sbjct: 499 LKSWNYQQFSIDLLT----VKGAGHMVPMDRPGPALQIFYNYLYNTNGGYSNQVPYDLTA 554

Query: 390 AP 395
            P
Sbjct: 555 TP 556


>AF016449-7|AAG24000.2|  350|Caenorhabditis elegans Hypothetical
           protein C50H11.13 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 231 KRRAHLISYYESVKHAQSVQLDDIXLPAIQVPDNILYNTAP 353
           KR AH + Y  S+  A  V L  I L  +    +++Y+T P
Sbjct: 60  KRNAHFLPYLCSILAANFVLLSTIFLSVLAKNTDLVYDTIP 100


>AF003141-12|AAP68910.1|  946|Caenorhabditis elegans Hypothetical
           protein W02D3.10b protein.
          Length = 946

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 204 SNVKKWQYEKRRAHLISYY-ESVKHAQSVQLDDIXLPAIQVPDNILY 341
           +N  K  + +R    ++ + + V+    ++LDD  LP     DNIL+
Sbjct: 178 NNNSKMSFNQRWKDFVAVFIKKVRDIDQIELDDELLPGSDAADNILF 224


>AF003141-11|AAP68909.1| 1437|Caenorhabditis elegans Hypothetical
           protein W02D3.10a protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 204 SNVKKWQYEKRRAHLISYY-ESVKHAQSVQLDDIXLPAIQVPDNILY 341
           +N  K  + +R    ++ + + V+    ++LDD  LP     DNIL+
Sbjct: 178 NNNSKMSFNQRWKDFVAVFIKKVRDIDQIELDDELLPGSDAADNILF 224


>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 306 LPAIQVPDNILYNTAPPXQIPLPADITQAP 395
           LP +QVP   L     P Q+P P  ITQ P
Sbjct: 352 LPPVQVPIQTLPPQTRPPQLP-PVQITQPP 380


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 306 LPAIQVPDNILYNTAPPXQIPLPADITQAP 395
           LP +QVP   L     P Q+P P  ITQ P
Sbjct: 449 LPPVQVPIQTLPPQTRPPQLP-PVQITQPP 477


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,586,845
Number of Sequences: 27780
Number of extensions: 173436
Number of successful extensions: 468
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)