Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0180
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54260.1 68416.m05997 expressed protein various predicted pro...    27   6.2  
At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identica...    27   8.3  
At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identica...    27   8.3  
At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identica...    27   8.3  

>At3g54260.1 68416.m05997 expressed protein various predicted
           proteins, Arabidopsis thaliana
          Length = 379

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = -3

Query: 389 LGNIRGQRYLXRGRSIVQNVVRNLYCRQRNIIQLNRLSMLH 267
           LG +RG+R +  G S+++N   +L C  ++++  +R  + +
Sbjct: 111 LGKMRGKRIMLVGDSMMRNQWESLVCLVQSVLPTHRKKLTY 151


>At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1150

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 261 ESVKHAQSVQLDDIXLPAIQVPDNILYN 344
           +S  H Q  QL    L  +QVP N LYN
Sbjct: 590 QSHSHPQPQQLQQHKLQQLQVPQNQLYN 617


>At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1164

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 261 ESVKHAQSVQLDDIXLPAIQVPDNILYN 344
           +S  H Q  QL    L  +QVP N LYN
Sbjct: 589 QSHSHPQPQQLQQHKLQQLQVPQNQLYN 616


>At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1165

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 261 ESVKHAQSVQLDDIXLPAIQVPDNILYN 344
           +S  H Q  QL    L  +QVP N LYN
Sbjct: 590 QSHSHPQPQQLQQHKLQQLQVPQNQLYN 617


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,793,466
Number of Sequences: 28952
Number of extensions: 150698
Number of successful extensions: 309
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)