Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0179
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1250 - 25183375-25183815 107 3e-24
03_04_0027 + 16593133-16593573 103 6e-23
02_01_0563 + 4134954-4135388 101 2e-22
11_03_0135 - 10547460-10547558,10547926-10548086,10548183-105483... 28 4.5
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021... 27 6.0
08_02_1146 + 24678142-24678258,24678550-24678587,24678997-246790... 27 6.0
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486 27 6.0
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626... 27 7.9
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 27 7.9
>07_03_1250 - 25183375-25183815
Length = 146
Score = 107 bits (258), Expect = 3e-24
Identities = 54/147 (36%), Positives = 76/147 (51%)
Frame = +3
Query: 3 TXAKNKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNF 182
T + K RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR F
Sbjct: 2 TTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYF 61
Query: 183 HFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQP 362
H +NK + P +N+++LW++V + + A A GK P++++ + P++P
Sbjct: 62 HRLRNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEKP 119
Query: 363 VIVXXXXXXXXXXXXXXDVGGACVLSA 443
++V GGA VL+A
Sbjct: 120 IVVKAKLISKVAEKKIKAAGGAVVLTA 146
>03_04_0027 + 16593133-16593573
Length = 146
Score = 103 bits (248), Expect = 6e-23
Identities = 55/143 (38%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Frame = +3
Query: 18 KTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKN 197
K RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR FH N
Sbjct: 7 KNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLSN 66
Query: 198 KNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK-AXXXXXXXXXXXPKQPVIVX 374
+ CP +N+++LW++V K A A GK PVI++ + P++P++V
Sbjct: 67 RFHCPAVNVERLWSMVPTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQRPIVVK 123
Query: 375 XXXXXXXXXXXXXDVGGACVLSA 443
GGA +L+A
Sbjct: 124 AKLISKVAEKKIKAAGGAVLLTA 146
>02_01_0563 + 4134954-4135388
Length = 144
Score = 101 bits (243), Expect = 2e-22
Identities = 54/143 (37%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Frame = +3
Query: 18 KTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKN 197
K RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR FH N
Sbjct: 7 KNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHRLSN 66
Query: 198 KNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK-AXXXXXXXXXXXPKQPVIVX 374
+ CP +N+++LW++V + A A GK PVI++ + P++P++V
Sbjct: 67 RFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPERPIVVK 121
Query: 375 XXXXXXXXXXXXXDVGGACVLSA 443
GGA +L+A
Sbjct: 122 AKLISKVAEKKIKAAGGAVLLTA 144
>11_03_0135 -
10547460-10547558,10547926-10548086,10548183-10548306,
10548566-10548729,10549803-10549883,10549973-10550097,
10550200-10550430,10550566-10550588,10551055-10551539,
10551678-10552075,10552903-10552988,10553120-10553397,
10553494-10553714,10553927-10554018,10554148-10554213,
10555855-10556022
Length = 933
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 257 EAEVCICSRWQ-GPRHQYCQSWILQVARQRQTPQTTCHSK 373
E ++ +CSR G H YC ++Q + + TCHS+
Sbjct: 288 EEKLAVCSRCNDGAEHIYCMRVMMQEVPKAKWLCETCHSE 327
>09_04_0302 +
16501020-16501049,16501568-16501659,16502063-16502198,
16502297-16502727,16502950-16503028
Length = 255
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 126 FCDGAHHQHYHDLLDAYG 73
+C+G HH H H D+ G
Sbjct: 132 YCNGGHHHHGHQCYDSVG 149
>08_02_1146 +
24678142-24678258,24678550-24678587,24678997-24679012,
24679874-24680002,24680073-24680229,24680337-24680530,
24680668-24680916,24681196-24681309,24681949-24681990,
24682402-24682572,24682932-24683104,24683378-24683624,
24684046-24684130,24684401-24684510,24684714-24684977,
24685885-24685950,24686431-24686525,24686780-24686858
Length = 781
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = +2
Query: 290 GPRHQYCQSWILQVARQRQTPQTTCHS 370
GP H WI + +Q P+ HS
Sbjct: 258 GPMHNAADKWITEFGKQNNNPEEWAHS 284
>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
Length = 296
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 109 PPALPRPPGCLRCFPIRPCP 50
PPA P PP L C P+ P P
Sbjct: 10 PPAPPSPPPALPCDPMPPPP 29
>04_03_1020 -
21761297-21761555,21761630-21761739,21762402-21762635,
21762710-21762817,21762910-21762969,21763549-21763624,
21763710-21763870,21764485-21764547,21764657-21764744,
21765062-21765592,21766344-21766783
Length = 709
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -1
Query: 112 SPP-ALPRPPGCLRCFPIRPCP 50
SPP LP PPG C P+ P P
Sbjct: 263 SPPHPLPLPPGPATCSPLPPSP 284
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +2
Query: 299 HQYCQSWILQVARQRQTPQTTCHSKSKVLLKISREENQGCGWC 427
H Y S ILQ QR + + V + I N+G WC
Sbjct: 437 HTYLDSAILQHQLQRLSEHNLLKATPSVFVVIQAIVNEGAVWC 479
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,589,192
Number of Sequences: 37544
Number of extensions: 234207
Number of successful extensions: 756
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -