Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0179
         (484 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)                   104   3e-23
SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08)                    32   0.28 
SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)
          Length = 173

 Score =  104 bits (250), Expect = 3e-23
 Identities = 52/107 (48%), Positives = 63/107 (58%)
 Frame = +3

Query: 123 RINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVI 302
           R + +  HPGYFGK+GMR+FH  +N    P +NLDK+W+LVSEQTR  Y +  DG VPVI
Sbjct: 67  RGSYEAIHPGYFGKVGMRHFHLTRNAYHKPSINLDKVWSLVSEQTRQNYKNKKDGPVPVI 126

Query: 303 NIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 443
           ++VKA           PKQPVIV               VGGACVL A
Sbjct: 127 DVVKAGYYKVLGKGLLPKQPVIVKAKFFSRRAEDKIKAVGGACVLMA 173


>SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08)
          Length = 240

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 207 RNSCSF*SGNFSYQVCQSIQDGTCPC*FCDGAHHQHYHDLLDAYGA 70
           R+SC   +  F   +C+S    T PC   D  H +H  DL+D  GA
Sbjct: 52  RSSCQ--ARCFMNNLCRSYNYNTTPCQLSDSDHLEHPSDLVDKPGA 95


>SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -2

Query: 246 RLMSKAYLSSKLDRNSCSF*SGNFSYQVCQSIQDGTCPC*FCDGAH 109
           R++ K YL    ++  C   +    + +C+   +G+C    CD +H
Sbjct: 85  RVILKTYLCVSYEQGFCKSGNSCTRWHICKGFLEGSCTGTHCDKSH 130


>SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 131 HGQVPSWILWQTWY 172
           +G+  SW++W+TW+
Sbjct: 342 YGEFSSWLVWRTWF 355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,973,020
Number of Sequences: 59808
Number of extensions: 262671
Number of successful extensions: 622
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)