Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0179
         (484 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a pr...   152   7e-37
BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for IM...   152   7e-37
BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a ...   152   7e-37
AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A ...   152   7e-37
BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a ...   146   5e-35
AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a ...   132   8e-31
AB007178-1|BAA25837.1|   34|Homo sapiens ribosomal protein L27a ...    46   9e-05
AY358091-1|AAQ88458.1|  126|Homo sapiens VFLL3057 protein.             29   8.6  
AK126225-1|BAC86496.1|  139|Homo sapiens protein ( Homo sapiens ...    29   8.6  

>U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  152 bits (368), Expect = 7e-37
 Identities = 71/142 (50%), Positives = 86/142 (60%)
 Frame = +3

Query: 18  KTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKN 197
           KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM+++H ++N
Sbjct: 7   KTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRN 66

Query: 198 KNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXX 377
           ++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++           PKQPVIV  
Sbjct: 67  QSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKA 126

Query: 378 XXXXXXXXXXXXDVGGACVLSA 443
                        VGGACVL A
Sbjct: 127 KFFSRRAEEKIKSVGGACVLVA 148


>BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for
           IMAGE:3543815) protein.
          Length = 147

 Score =  152 bits (368), Expect = 7e-37
 Identities = 71/142 (50%), Positives = 86/142 (60%)
 Frame = +3

Query: 18  KTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKN 197
           KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM+++H ++N
Sbjct: 6   KTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRN 65

Query: 198 KNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXX 377
           ++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++           PKQPVIV  
Sbjct: 66  QSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKA 125

Query: 378 XXXXXXXXXXXXDVGGACVLSA 443
                        VGGACVL A
Sbjct: 126 KFFSRRAEEKIKSVGGACVLVA 147


>BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  152 bits (368), Expect = 7e-37
 Identities = 71/142 (50%), Positives = 86/142 (60%)
 Frame = +3

Query: 18  KTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKN 197
           KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM+++H ++N
Sbjct: 7   KTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRN 66

Query: 198 KNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXX 377
           ++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++           PKQPVIV  
Sbjct: 67  QSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKA 126

Query: 378 XXXXXXXXXXXXDVGGACVLSA 443
                        VGGACVL A
Sbjct: 127 KFFSRRAEEKIKSVGGACVLVA 148


>AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A
           protein.
          Length = 148

 Score =  152 bits (368), Expect = 7e-37
 Identities = 71/142 (50%), Positives = 86/142 (60%)
 Frame = +3

Query: 18  KTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKN 197
           KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM+++H ++N
Sbjct: 7   KTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRN 66

Query: 198 KNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXX 377
           ++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++           PKQPVIV  
Sbjct: 67  QSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKA 126

Query: 378 XXXXXXXXXXXXDVGGACVLSA 443
                        VGGACVL A
Sbjct: 127 KFFSRRAEEKIKSVGGACVLVA 148


>BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  146 bits (353), Expect = 5e-35
 Identities = 69/142 (48%), Positives = 85/142 (59%)
 Frame = +3

Query: 18  KTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKN 197
           KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM++++ ++N
Sbjct: 7   KTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYNLKRN 66

Query: 198 KNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXX 377
           ++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++            KQPVIV  
Sbjct: 67  QSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLAKQPVIVKA 126

Query: 378 XXXXXXXXXXXXDVGGACVLSA 443
                        VGGACVL A
Sbjct: 127 KLFSRRAEEKIKSVGGACVLVA 148


>AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a
           protein.
          Length = 106

 Score =  132 bits (318), Expect = 8e-31
 Identities = 56/100 (56%), Positives = 71/100 (71%)
 Frame = +3

Query: 18  KTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKN 197
           KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM+++H ++N
Sbjct: 7   KTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRN 66

Query: 198 KNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 317
           ++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++
Sbjct: 67  QSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106


>AB007178-1|BAA25837.1|   34|Homo sapiens ribosomal protein L27a
           protein.
          Length = 34

 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +3

Query: 216 LNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 317
           +NLDKLWTLVSEQTR+  A    G  P+I++V++
Sbjct: 1   VNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 34


>AY358091-1|AAQ88458.1|  126|Homo sapiens VFLL3057 protein.
          Length = 126

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -1

Query: 169 PSLPKYPGWYLSMLIL*WCSPPALPRPPGCLRCFPIRPCP---*LT*PLSFLV 20
           P+LPK+PG  ++ L   W S    P P G +    + PCP       PL FLV
Sbjct: 55  PALPKWPGHLMAELQGPWLSLAHCPSPSGPI----VLPCPFRVQFEPPLQFLV 103


>AK126225-1|BAC86496.1|  139|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44237 fis, clone THYMU3007845. ).
          Length = 139

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 12/43 (27%), Positives = 15/43 (34%)
 Frame = +2

Query: 314 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGCGWCLCTIC 442
           +W L      Q PQ        + L   R   + C WC C  C
Sbjct: 71  AWFLSPVHHSQIPQLAACPLQSLRLSKPRSPGRCCAWCGCLNC 113


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,238,591
Number of Sequences: 237096
Number of extensions: 1286998
Number of successful extensions: 2852
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2845
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4327667848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)