Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0178
         (800 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    52   5e-09
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   2.1  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   6.5  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   8.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 52.0 bits (119), Expect = 5e-09
 Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 9/176 (5%)
 Frame = +1

Query: 274  AKQLQLLYISSITPAMAGNYSCEATYTNIPLXASVILDTFVAITWTNANENQYATKGKDF 453
            +K++  L I ++     GNY+C A+ +      +  L   V   W     ++   +G D 
Sbjct: 657  SKRVSTLSIDNVQSTHVGNYTCLASNSASVTTYTTSLFINVPPRWILEPTDKAFAQGSDA 716

Query: 454  KVMCXVTAEPAPSVDWFXEENPIVTGDRYVIHANG---------LMIKNVQESDDGTYTC 606
             V C     P P V W      +  GD      N          L I N+Q++++G Y C
Sbjct: 717  AVECKADGFPRPVVTW-KRATGVSPGDYKDFKPNNPDIKVEDGTLTINNIQKTNEGYYLC 775

Query: 607  RAVVMQTGELAEXNIKLXVYTAPEMEDRETTVRIKEGESAAITCKARGKPXPTYTW 774
             A V   G      I++ V   P+ + +      + G+ A + C+A+G+      W
Sbjct: 776  EA-VNGIGSGLSAVIQISVQAPPQFDIKLRNQTSRRGDPAVLQCEAKGEKPIGILW 830



 Score = 48.0 bits (109), Expect = 9e-08
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
 Frame = +1

Query: 439 KGKDFKVMCXVTAEPAP-SVDW-----FXEENPIVTGDRYVIHANGLMIKNVQESDDGTY 600
           +G    V C V+    P ++ W     F ++   +  +R     + L I NVQ +  G Y
Sbjct: 617 EGDGVSVQCTVSKGDYPLNISWTLNGHFIDQTNGIVINRASKRVSTLSIDNVQSTHVGNY 676

Query: 601 TCRAVVMQTGELAEXNIKLXVYTAPEMEDRETTVRIKEGESAAITCKARGKPXPTYTWIK 780
           TC A    +  +      L +   P      T     +G  AA+ CKA G P P  TW +
Sbjct: 677 TCLA--SNSASVTTYTTSLFINVPPRWILEPTDKAFAQGSDAAVECKADGFPRPVVTWKR 734

Query: 781 AS 786
           A+
Sbjct: 735 AT 736



 Score = 44.4 bits (100), Expect = 1e-06
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
 Frame = +1

Query: 457 VMCXVTAEPAPSVDWFX------EENPIVTGDRYVIHANGLMIKNVQESDDGTYTCRAVV 618
           ++C     P+PS  W+        +  +   DR    A  L+I+  +  D G Y C    
Sbjct: 252 LLCPAQGFPSPSFRWYKFVEGTTRKQAVTLNDRVKQVAGTLIIREAKVEDSGKYLCVVNN 311

Query: 619 MQTGELAEXNIKLXVYTAPEMEDRETTVRIKEGESAAITCKARGKPXPTYTWIK 780
              GE  E  + +      ++E +  T+    G  A  TC   G P  T +W+K
Sbjct: 312 SVGGESVETVLTVTAPLKAKIEPQVQTIDF--GRPATFTCNFEGNPIKTISWLK 363



 Score = 41.9 bits (94), Expect = 6e-06
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 1/112 (0%)
 Frame = +1

Query: 442 GKDFKVMCXVTAEPAPSVDWFXEENPIVTGDRYVIHANGLMIKNVQESDDGTYTCRAVVM 621
           G+     C     P  ++ W  + +PI   +        L I++V++ D G Y C     
Sbjct: 342 GRPATFTCNFEGNPIKTISWLKDGHPIDHNEAV------LRIESVRKEDKGMYQCFIRND 395

Query: 622 QTGELAEXNIKLXV-YTAPEMEDRETTVRIKEGESAAITCKARGKPXPTYTW 774
           Q    A   +KL   +  P++        ++ G S  + C A G P P  TW
Sbjct: 396 QESAEATAELKLGGRFEPPQIRHAFNEETVQPGNSVFLKCIASGNPTPEITW 447



 Score = 26.6 bits (56), Expect = 0.23
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
 Frame = +1

Query: 535 RYVIHANG-LMIKNVQESDD-GTYTCRAVVMQTGELAEXNIK-LXVYTAP---EMEDRET 696
           +Y++  +G L I++V   D   +Y CR     TGE      K   V T P   +     T
Sbjct: 176 KYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGTKAPAFST 235

Query: 697 TVRI-----KEGESAAITCKARGKPXPTYTWIK 780
            +++        ++ A+ C A+G P P++ W K
Sbjct: 236 DIKVLGYQRHSKQNVALLCPAQGFPSPSFRWYK 268



 Score = 25.0 bits (52), Expect = 0.70
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 724 AAITCKARGKPXPTYTWIKA 783
           A + C A G P P   W+++
Sbjct: 41  AVVECSAHGNPTPDIIWVRS 60



 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 718  ESAAITCKARGKPXPTYTW 774
            E   + C A G P P  TW
Sbjct: 1322 EDVTLPCLAVGLPPPVITW 1340


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 166 VHQLDR*VQQTSQLPQSAVSISEVSSGFGXDNLLLLPTEPPKPSHLSH 23
           +H L R V  TS+    ++       G G DN+ L+ T+      +SH
Sbjct: 223 LHSLPRLVLFTSEDAHYSIKKLASFQGIGTDNVYLIRTDARGRMDVSH 270


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +1

Query: 634 LAEXNIKLXVYTAPEMEDRETTVRIKEGESAAITCKARG 750
           LAE  +   +YTA       T+   ++G S  +  K  G
Sbjct: 274 LAESGVDTSIYTAHSTRHAATSAAARKGISLDLIRKTAG 312


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 278 LAGIASVYISGRVPAAASMMICPFG 204
           L G+A + I G V AA + ++C  G
Sbjct: 3   LKGLALLSILGIVSAATNKVVCYHG 27


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +1

Query: 310  TPAMAGNYSCEATYTNIPLXASVILDTFVAITW 408
            T +   N S  A   NIP  A       +A +W
Sbjct: 1009 THSATSNSSVNANTNNIPTNAGTTPGAILAFSW 1041


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.130    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,593
Number of Sequences: 336
Number of extensions: 4427
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)