Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0178
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma...    30   0.44 
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    28   1.3  
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    27   4.1  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    27   4.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.5  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   9.5  

>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +2

Query: 665 TPHQKWKTERRQLESKRENQLQLLAKREESRHQHILGLKLR 787
           TP++K   ++R+L+  +E + +L  ++EE R  H   ++ R
Sbjct: 33  TPYEKRMEQKRKLDEIKEREKELKREKEEQRAAHAEKIRTR 73


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 154 DR*VQQTSQLPQSAVSISEVSSGFGXDNLLLLPTEPPKPSHLSH 23
           D+   Q SQ  QS+  +S+  SG+  D+  +  +E   PSH+ +
Sbjct: 102 DQNESQASQAKQSSAQLSDSESGYPLDHEEMRISEENGPSHIEN 145


>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 800 RFSRVEALIQVYVGXGFPLALQVIAADSPSLILTVVS 690
           +F   E L+ +Y   GFP A  +  A + ++  T+VS
Sbjct: 119 QFLGYEQLLPLYSDWGFPAAAAIAGASARTISATIVS 155


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 463 CXVTAEPAPSVDWFXEENPIVT--GDRYVIHANGLMIKNVQESDDGTY 600
           C +  E  PSV++  EE P+ T     + +    L  +N   +D+ +Y
Sbjct: 58  CTLEVEGEPSVEYVAEETPMSTYLNLHFALEGLRLQAENAAANDESSY 105


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 617 TTARQVYVPSSLS*TFLIIRPLAWIT-YLSPVTIGFSSLNQSTDGAGSAVTSHMTLKSLP 441
           T++ Q  V S+ S TF    P +  + YLS  ++  SS + S+  + +  +S ++  S+P
Sbjct: 182 TSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIP 241


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 548 WITYLSPVTIGFSSL 504
           WI YL P+  GF SL
Sbjct: 712 WIAYLDPLQFGFESL 726


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.130    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,356,926
Number of Sequences: 5004
Number of extensions: 70383
Number of successful extensions: 201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)