Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0178
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0557 + 4394754-4396040                                           30   2.5  
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811...    30   2.5  
06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560     29   4.3  
05_07_0334 - 29358823-29360247                                         29   5.7  
11_01_0233 + 1801011-1802081                                           28   7.5  
06_03_0901 - 25800317-25800403,25800420-25800674,25800817-258010...    28   9.9  
04_03_0803 - 19835284-19836050,19836337-19836418                       28   9.9  

>11_01_0557 + 4394754-4396040
          Length = 428

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 26/82 (31%), Positives = 37/82 (45%)
 Frame = -1

Query: 473 VTSHMTLKSLPLVAYWFSLAFVQVIATNVSKITLAXRGIFV*VASQE*FPAIAGVIEDIY 294
           V S + L +LPL    F      +  ++VS   LA       V   +  P  AG++  I 
Sbjct: 309 VVSAIALMALPL----FRTPSGAIFCSSVSLGFLALGRAGFAVNHMDVAPKFAGIVMGIS 364

Query: 293 NN*SCLAGIASVYISGRVPAAA 228
           N    LAGI  V ++GR+  AA
Sbjct: 365 NTAGTLAGIVGVGLTGRILEAA 386


>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
            23681200-23681559,23681645-23682086,23682199-23682332,
            23682479-23682680
          Length = 2391

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = -1

Query: 569  LIIRPLAWITYLSPVTIGFSSLNQSTDGAGSAVTSHMTLKSLPLVAYWFSLAFVQVIATN 390
            L++ P+ WI Y+S  ++  S L +S       +   +++ S+  V +W +L   Q +A  
Sbjct: 1353 LVMAPIVWIFYISLTSLSLSILGKSFLQPNYVLIPDVSIWSVDFVKWW-ALNKAQALAAK 1411

Query: 389  VSKITL 372
            +  + L
Sbjct: 1412 MLAVHL 1417


>06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560
          Length = 546

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 185 HSHSGGTRKDRSSWKLLLELVRKYTQKQCLPNSFNCCIYPR*RL-QWLETIPVRLL 349
           H+  G   KDR  + +LLE   K   +  LP+     +YP  RL  WL  +P R++
Sbjct: 198 HAIIGSRFKDRDKYLMLLERGLKLFARHTLPD-----LYPSSRLAMWLSRMPRRMM 248


>05_07_0334 - 29358823-29360247
          Length = 474

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +1

Query: 565 IKNVQESDDGTYTCRAVVMQTGELAEXNIKLXVY 666
           +KN + SD+GTYT  + VMQ G++A     L +Y
Sbjct: 283 VKN-RTSDEGTYTLGSHVMQYGDMALAPQSLDLY 315


>11_01_0233 + 1801011-1802081
          Length = 356

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 124 PQSAVSISEVSSGFGXDNLLLLPTEPP 44
           P++ V++ +V++  G D  L LP EPP
Sbjct: 53  PRNGVTVHDVTTARGVDVRLYLPAEPP 79


>06_03_0901 -
           25800317-25800403,25800420-25800674,25800817-25801043,
           25801773-25801929,25802977-25803159
          Length = 302

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = -2

Query: 118 SAVSISEVSSGFGXDNLLLLPTEPPKPSHLSHPPA*ASC 2
           SAV   + SS    D+LL  P  PP P H  H PA  SC
Sbjct: 2   SAVVCGKRSSAIFADDLL--PPSPPSP-HSHHHPAKRSC 37


>04_03_0803 - 19835284-19836050,19836337-19836418
          Length = 282

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
 Frame = +3

Query: 9   AQAGGCDRCDGFGGSVGNNNRLSXPKPEDTS---DIETADCGSW 131
           ++ GGCD  D  GG  G    ++ P P   S        DCG W
Sbjct: 203 SRCGGCDHAD-CGGWCGGQPPINCPPPPPPSRCGGCGHGDCGGW 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.130    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,663,252
Number of Sequences: 37544
Number of extensions: 493059
Number of successful extensions: 1523
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1522
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)