Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0178
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27650.1 68417.m03974 pelota (PEL1) identical to pelota [Arab...    30   1.6  
At5g04070.1 68418.m00389 short-chain dehydrogenase/reductase (SD...    28   6.3  
At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplas...    28   8.3  

>At4g27650.1 68417.m03974 pelota (PEL1) identical to pelota
           [Arabidopsis thaliana] GI:3941543; contains InterPro
           accession IPR004403: Peptide chain release factor
           eRF/aRF subunit 1
          Length = 378

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +2

Query: 569 KTFKKVMMV---HILVELSSCKLVNLPKXTLNLXFTPHQKWKTERRQLESKRENQLQLLA 739
           K F+ V+     H+   +  C +V  P  T +  F  H   + ERRQL    EN+ +++ 
Sbjct: 184 KFFENVLQAFVKHVDFSVVRCAVVASPGFTKD-QFHRHLLLEAERRQLRPIIENKSRIIL 242

Query: 740 KREESRHQHILGLKLRHA 793
               S ++H LG ++ HA
Sbjct: 243 VHTNSGYRHSLG-EVLHA 259


>At5g04070.1 68418.m00389 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           Short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 359

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 377 LFW-IHLLLSLGQMLMRTSMQPKAKISKSCAXLQPS 481
           LFW I LL S  Q+L ++   PK+  S SC+    S
Sbjct: 21  LFWNIALLFSYFQLLKKSIFAPKSSSSSSCSKFNHS 56


>At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplasmic
            reticulum-type (ECA2) nearly identical to SP|O23087
            Calcium-transporting ATPase 2, endoplasmic reticulum-type
            (EC 3.6.3.8) {Arabidopsis thaliana}; contains InterPro
            Accession IPR006069: Cation transporting ATPase
          Length = 1054

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 91   RILPISKQQTVAVGKSVVLTCQADAPDPALVTQPQWRDP 207
            ++ P++   TV V   +  +  A + D +L+T P WR+P
Sbjct: 945  KVKPMTLSLTVLVAIEMFNSLNALSEDNSLLTMPPWRNP 983


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.130    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,914,603
Number of Sequences: 28952
Number of extensions: 385294
Number of successful extensions: 1173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)