Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0177
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 307 8e-84
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 300 9e-82
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 263 9e-71
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 126 3e-29
05_05_0377 - 24498664-24500215,24500306-24500643 28 9.5
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 307 bits (753), Expect = 8e-84
Identities = 140/225 (62%), Positives = 170/225 (75%)
Frame = +2
Query: 95 RVVAAKPVVEMDGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAH 274
++ A P+VEMDGDEMTR+ W IK++LIFP++++D YFDLGLP+RD TDD+VT+++A
Sbjct: 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPYRDQTDDKVTVEAAE 64
Query: 275 AILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVP 454
A LK+NV IKCATITPDE RV+EF LK MW SPNGTIRNIL GTVFREPI+C++IPR+VP
Sbjct: 65 ATLKYNVAIKCATITPDEARVKEFSLKSMWKSPNGTIRNILNGTVFREPIICKNIPRLVP 124
Query: 455 GWTKPIVIXRHAHGDQYXAQDFVVPKPGKVELVYTTRDGTTEXRVLYDFKTPGVAMGMYN 634
GWTKPI I RHA GDQY A D V+ PGK++LVY +D E V GVA MYN
Sbjct: 125 GWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVYEGKDEEIELEVFNFTGAGGVAQSMYN 184
Query: 635 TDESIRSFXHXSFXVALQKKWXLYLSTXNTILKRYHGSXQXHFRK 769
TDESIRSF S A +KKW LYLST NTILK+Y G + F++
Sbjct: 185 TDESIRSFAEASMATAYEKKWPLYLSTKNTILKKYDGRFKDIFQE 229
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 300 bits (736), Expect = 9e-82
Identities = 135/226 (59%), Positives = 172/226 (76%)
Frame = +2
Query: 92 KRVVAAKPVVEMDGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSA 271
+++ A P+VEMDGDEMTRI W IK++LIFP++ +D Y+DLG+ HRDATDD+VT+++A
Sbjct: 4 EKIKVANPIVEMDGDEMTRIFWQSIKDKLIFPFLDLDIKYYDLGVLHRDATDDKVTVEAA 63
Query: 272 HAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVV 451
A LK+NV IKCATITPDE RV+EF LK+MW SPNGTIRNI+ GTVFREPI+C+++PR+V
Sbjct: 64 EATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNGTIRNIINGTVFREPIICKNVPRLV 123
Query: 452 PGWTKPIVIXRHAHGDQYXAQDFVVPKPGKVELVYTTRDGTTEXRVLYDFKTPGVAMGMY 631
PGWTKPI I RHA GDQY A D V+ PGK++LV+ +D + V GVA+ MY
Sbjct: 124 PGWTKPICIGRHAFGDQYRATDAVLKGPGKLKLVFEGKDEQIDLEVFNFTGAGGVALSMY 183
Query: 632 NTDESIRSFXHXSFXVALQKKWXLYLSTXNTILKRYHGSXQXHFRK 769
NTDESIR+F S A +KKW LYLST NTILK+Y G + F++
Sbjct: 184 NTDESIRAFAEASMTTAYEKKWPLYLSTKNTILKKYDGRFKDIFQE 229
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 263 bits (645), Expect = 9e-71
Identities = 132/237 (55%), Positives = 162/237 (68%), Gaps = 18/237 (7%)
Frame = +2
Query: 116 VVEMDGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNV 295
V GDEMTR++W IK++LIFP++ +D Y+DLGLP+RDAT D+VTI+SA A LK+NV
Sbjct: 37 VTRNSGDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTIESAEATLKYNV 96
Query: 296 GIKCATITP------------------DEQRVEEFKLKKMWLSPNGTIRNILGGTVFREP 421
IKCATITP DE RV+EF L MW SPNGTIRNIL GTVFREP
Sbjct: 97 AIKCATITPVLDTQFKFDFGRTIHEPTDEGRVKEFNLSAMWKSPNGTIRNILNGTVFREP 156
Query: 422 ILCQSIPRVVPGWTKPIVIXRHAHGDQYXAQDFVVPKPGKVELVYTTRDGTTEXRVLYDF 601
I+C++IPR+VPGW KPI I RHA GDQY A D V+ PGK++LV+ R+ E V
Sbjct: 157 IICKNIPRLVPGWIKPICIGRHAFGDQYRATDTVIKGPGKLKLVFDGREEQIELDVFNFT 216
Query: 602 KTPGVAMGMYNTDESIRSFXHXSFXVALQKKWXLYLSTXNTILKRYHGSXQXHFRKN 772
GVA+ MYNTDESI +F S +A QK+W LYLST NTILK+Y G + F++N
Sbjct: 217 GAGGVALSMYNTDESIWAFAEASMNMAYQKRWPLYLSTKNTILKKYDGRFKDIFQEN 273
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 126 bits (303), Expect = 3e-29
Identities = 62/101 (61%), Positives = 77/101 (76%), Gaps = 2/101 (1%)
Frame = +2
Query: 176 LIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLK 355
LIFPY+++D YFDLGL +RDATDD+VT++SA A L T+T DE RV+EFKLK
Sbjct: 101 LIFPYLELDVKYFDLGLLNRDATDDKVTVESAEATLDLYSNSFFMTLT-DETRVKEFKLK 159
Query: 356 KMWLSPNGTIRNILGGTVFREPILCQSIPRV--VPGWTKPI 472
MW SPNGTIRNIL GTVFREPILC+++PR+ VP +P+
Sbjct: 160 SMWRSPNGTIRNILNGTVFREPILCKNVPRILSVPDGAEPV 200
Score = 78.6 bits (185), Expect = 5e-15
Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Frame = +2
Query: 542 VELVYTTRDGTTEXRV-LYDFKTPGVAMGMYNTDESIRSFXHXSFXVALQKKWXLYLSTX 718
V + + DG + +Y+FK PGVA+ MYN DESIR+F S +AL KKW LYLST
Sbjct: 187 VPRILSVPDGAEPVELNVYNFKGPGVALSMYNVDESIRAFAESSMAMALSKKWPLYLSTK 246
Query: 719 NTILKRYHGSXQXHFRK 769
NTILK+Y G + F++
Sbjct: 247 NTILKKYDGRFKDIFQE 263
>05_05_0377 - 24498664-24500215,24500306-24500643
Length = 629
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -3
Query: 375 FGLSHIFFNLNSSTLCSSGVIVAHLMPTLCF 283
+ S +F LN + +C + L+PT+C+
Sbjct: 343 YASSECYFGLNLNPMCKPSEVAYTLIPTMCY 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,156,579
Number of Sequences: 37544
Number of extensions: 405543
Number of successful extensions: 823
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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