Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0177
(773 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) 264 7e-71
SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37) 234 7e-62
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23) 30 1.8
SB_18045| Best HMM Match : rve (HMM E-Value=0.25) 30 2.4
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 29 5.5
SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019) 28 9.6
SB_6680| Best HMM Match : Astacin (HMM E-Value=0) 28 9.6
>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
Length = 644
Score = 264 bits (646), Expect = 7e-71
Identities = 123/199 (61%), Positives = 150/199 (75%), Gaps = 1/199 (0%)
Frame = +2
Query: 173 RLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKL 352
+LI PY+ +D YFDLGL HRDAT+D+VT+++A AI KH+VGIKCATITPDE RVEEFKL
Sbjct: 19 QLISPYLDLDIKYFDLGLEHRDATNDKVTVEAAEAIRKHHVGIKCATITPDEARVEEFKL 78
Query: 353 KKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIXRHAHGDQYXAQDFVVPK 532
KKMW SPNGTIRNILGGTVFR PI+C+++PR+VPGW KPIVI RHA GDQY A+DF V
Sbjct: 79 KKMWKSPNGTIRNILGGTVFRAPIICKTVPRLVPGWEKPIVIGRHAFGDQYRARDFAVNG 138
Query: 533 PGKVELVYTTRDGTTEXRVLYDFK-TPGVAMGMYNTDESIRSFXHXSFXVALQKKWXLYL 709
PG E+ +T G +++F T GV MGMYNTDE+IR F H A+ K+ LY+
Sbjct: 139 PGSFEISFTPESGGKLTTEVFEFTGTGGVMMGMYNTDEAIRDFAHSCMQYAIHKQVPLYM 198
Query: 710 STXNTILKRYHGSXQXHFR 766
ST NTILK+Y G + F+
Sbjct: 199 STKNTILKKYDGRFKDIFQ 217
>SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)
Length = 296
Score = 234 bits (572), Expect = 7e-62
Identities = 112/168 (66%), Positives = 134/168 (79%), Gaps = 2/168 (1%)
Frame = +2
Query: 212 FDLGLPHRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRN 391
+DL + +RDAT+DQVTID+A AI + +VGIKCATITPDE+RVEEFKLKKMW SPNGTIRN
Sbjct: 6 YDLSIENRDATNDQVTIDAAAAIKQCHVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRN 65
Query: 392 ILGGTVFREPILCQSIPRVVPGWTKPIVIXRHAHGDQYXAQDFVVPKPGKVELVYTTRDG 571
ILGGTVFRE I+C++IPR+V WTKPI+I RHAH DQY A DFVVP PGKVE+VY+ DG
Sbjct: 66 ILGGTVFREAIICKNIPRLVSPWTKPIIIGRHAHADQYKATDFVVPGPGKVEIVYSPADG 125
Query: 572 TTEXR-VLYDFKT-PGVAMGMYNTDESIRSFXHXSFXVALQKKWXLYL 709
+ + +FK GV MGM+NTD SIR+F H SF AL KK+ LY+
Sbjct: 126 GEPIKYTVNEFKDGGGVTMGMFNTDVSIRAFAHSSFQYALDKKYPLYM 173
>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1378
Score = 31.5 bits (68), Expect = 0.78
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +2
Query: 221 GLPHRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILG 400
G+ HRD D + + + + G CATITP++ + W++P R G
Sbjct: 336 GVIHRDIKSDNILLGMDGQVKLTDFGF-CATITPEQNKRSTMVGTPYWMAPEVVTRKQYG 394
Query: 401 GTV 409
V
Sbjct: 395 PRV 397
>SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)
Length = 1531
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +2
Query: 47 CVNQFASLTRNYGTAKRVVAAKPVVEMDG----DEMTRIMWAKIKE-RLIFPYVKVDCLY 211
C + A+ TR G + + V + +G +E+ ++W+ + RL ++K DC+
Sbjct: 400 CSDADATFTRTSGKSLKHVRTGYCIHPNGGYPGNEVELLLWSGCDDQRLELWFMKQDCV- 458
Query: 212 FDLGLPHRDATDDQVTIDS 268
LGL + D D Q+T S
Sbjct: 459 LPLGLRNGDIPDSQITASS 477
>SB_18045| Best HMM Match : rve (HMM E-Value=0.25)
Length = 364
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 56 QFASLTRNYGTAKRVVAAKPVVEMDGDEM 142
Q +TRN K+V+ PV+E+D DE+
Sbjct: 285 QGKGITRNSSVFKKVILGTPVIEIDDDEI 313
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +2
Query: 503 YXAQDFVVPKPGKVELVYTTRDGTTEXRVLYDFKTPGVAMGMYNTDESIRSFXHXSF 673
Y A+D +PK L TR+G + R Y + P G +N + I S F
Sbjct: 95 YKAEDCSIPKREAPVLYGVTREGLCDLRYYYCKRFPLTGKGFFNNRKLICSVRQILF 151
>SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)
Length = 448
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -3
Query: 465 FVQPGTTLGIL*HNIGSRNTVPP-KMLRIVPFGLSHIFFNLNSS 337
F P T L + +NIGS NT+ ++ R VP G+ H + +N++
Sbjct: 38 FCHPATCLTVFRYNIGSLNTLKQLRIWREVPSGV-HKRYEMNAT 80
>SB_6680| Best HMM Match : Astacin (HMM E-Value=0)
Length = 637
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 338 EEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTK 466
E ++ K++ L P G + ++G + R P + I + + GW +
Sbjct: 76 EPWERKQVQLWPGGVVPYLIGEDLKRRPSFVKKIEQAMEGWER 118
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,729,544
Number of Sequences: 59808
Number of extensions: 487828
Number of successful extensions: 989
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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