Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0177
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81479-7|CAB03943.1|  435|Caenorhabditis elegans Hypothetical pr...   311   3e-85
Z68343-3|CAA92778.1|  412|Caenorhabditis elegans Hypothetical pr...   311   3e-85
Z81576-1|CAB04643.2|  312|Caenorhabditis elegans Hypothetical pr...    33   0.17 
AF077542-12|AAC26293.1|  169|Caenorhabditis elegans Hypothetical...    31   0.91 

>Z81479-7|CAB03943.1|  435|Caenorhabditis elegans Hypothetical
           protein C34F6.8 protein.
          Length = 435

 Score =  311 bits (764), Expect = 3e-85
 Identities = 144/239 (60%), Positives = 180/239 (75%), Gaps = 6/239 (2%)
 Frame = +2

Query: 68  LTRNYGTA-----KRVVAAKPVVEMDGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGLPH 232
           L RN  TA     +++    PVV++DGDEMTRI+W +IK +LI PY+ +D  Y+DLGL +
Sbjct: 12  LARNVATAATQERQKIKVDNPVVDLDGDEMTRIIWKEIKNKLILPYLDLDIKYYDLGLEY 71

Query: 233 RDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVF 412
           RD T+DQVTID+AHAIL+H+VGIKCATITPDE R++EF LKKMWLSPNGTIRNILGGTVF
Sbjct: 72  RDETNDQVTIDAAHAILEHSVGIKCATITPDEARIKEFNLKKMWLSPNGTIRNILGGTVF 131

Query: 413 REPILCQSIPRVVPGWTKPIVIXRHAHGDQYXAQDFVVPKPGKVELVYTTRDGTTEXRVL 592
           REPILC++IPR+VPGWT+PI I RHA GDQY   D V+P    ++L+    DG+ +   +
Sbjct: 132 REPILCKNIPRLVPGWTQPITIGRHAFGDQYKCTDLVIPSGSTLQLLVNKPDGSKDVHNV 191

Query: 593 YDF-KTPGVAMGMYNTDESIRSFXHXSFXVALQKKWXLYLSTXNTILKRYHGSXQXHFR 766
           YDF K+ GV + MYNTDESI+ F H  F  AL K+W LYLST NTILK+Y G  +  F+
Sbjct: 192 YDFKKSGGVGLAMYNTDESIKGFAHSCFQYALMKQWPLYLSTKNTILKKYDGRFKDIFQ 250


>Z68343-3|CAA92778.1|  412|Caenorhabditis elegans Hypothetical
           protein F59B8.2 protein.
          Length = 412

 Score =  311 bits (764), Expect = 3e-85
 Identities = 144/226 (63%), Positives = 177/226 (78%), Gaps = 1/226 (0%)
 Frame = +2

Query: 89  AKRVVAAKPVVEMDGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDS 268
           A + +    +VEM GDEMTRI+W  IKE+LI PYV ++  +FDLG+ HRDATDDQVTID+
Sbjct: 2   AAQKIQGGDIVEMQGDEMTRIIWDLIKEKLILPYVDLNVHFFDLGIEHRDATDDQVTIDA 61

Query: 269 AHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRV 448
           A+A LK+NV +KCATITPDE RVEEFKLKKMW SPNGTIRNILGGTVFREPI+ +++PR+
Sbjct: 62  ANATLKYNVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIIVKNVPRL 121

Query: 449 VPGWTKPIVIXRHAHGDQYXAQDFVVPKPGKVELVYTTRDGT-TEXRVLYDFKTPGVAMG 625
           V  W+KPI+I RHAH DQY A DFVVP  GK+E+ + + DGT T    ++DFK PGV++ 
Sbjct: 122 VNTWSKPIIIGRHAHADQYKATDFVVPGAGKLEIKFVSADGTQTIQETVFDFKGPGVSLS 181

Query: 626 MYNTDESIRSFXHXSFXVALQKKWXLYLSTXNTILKRYHGSXQXHF 763
           MYNTD+SIR F H SF  ALQ+K+ LYLST NTILK+Y G  +  F
Sbjct: 182 MYNTDDSIRDFAHASFKYALQRKFPLYLSTKNTILKKYDGRFKDIF 227


>Z81576-1|CAB04643.2|  312|Caenorhabditis elegans Hypothetical
           protein R10E8.1 protein.
          Length = 312

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 122 EMDGDEMTRIM-WAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVG 298
           EMD D +T++  W +IK  LI  ++    L   L LP    T   +TI +   + KH +G
Sbjct: 170 EMDCDGLTKLPHWKRIKSLLIEGFIVSAPLEHFLHLPEVTITMQSITIFNLKLLKKHFLG 229

Query: 299 IK 304
           +K
Sbjct: 230 LK 231


>AF077542-12|AAC26293.1|  169|Caenorhabditis elegans Hypothetical
           protein Y57G7A.9 protein.
          Length = 169

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 245 DDQVTIDSAHAILKHNVGIKCATITPDEQRVE 340
           +DQ   +  H I K N GI+CA + P+ Q  E
Sbjct: 29  NDQYFQEVIHRICKRNEGIRCAMLAPNAQHAE 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,349,638
Number of Sequences: 27780
Number of extensions: 355304
Number of successful extensions: 707
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)