BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0176 (775 letters) Database: mosquito 2352 sequences; 563,979 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AY334011-1|AAR01136.1| 188|Anopheles gambiae beta-tubulin protein. 78 3e-16 AY334010-1|AAR01135.1| 188|Anopheles gambiae beta-tubulin protein. 78 3e-16 AY334009-1|AAR01134.1| 188|Anopheles gambiae beta-tubulin protein. 78 3e-16 AY334008-1|AAR01133.1| 188|Anopheles gambiae beta-tubulin protein. 78 3e-16 U50468-1|AAA93472.1| 91|Anopheles gambiae protein ( Anopheles ... 50 6e-08 AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript... 24 0.48 AF515521-1|AAM61888.1| 233|Anopheles gambiae glutathione S-tran... 23 7.9 >AY334011-1|AAR01136.1| 188|Anopheles gambiae beta-tubulin protein. Length = 188 Score = 78.2 bits (184), Expect = 3e-16 Identities = 32/84 (38%), Positives = 54/84 (64%) Frame = +2 Query: 524 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 703 ++ +Y + +++ P+P+VS VVEPYN+ L+ H +E++D + +DNEA+YDIC R Sbjct: 50 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFR 109 Query: 704 NLDIERPTYTNLNRLIGQIXSSIT 775 L + P+Y +LN L+ S +T Sbjct: 110 TLKVPNPSYGDLNHLVSLTMSGVT 133 Score = 41.5 bits (93), Expect = 3e-05 Identities = 18/33 (54%), Positives = 22/33 (66%) Frame = +1 Query: 376 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 474 HYT G E+VD VLD +RK + C LQGF + H Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTH 33 >AY334010-1|AAR01135.1| 188|Anopheles gambiae beta-tubulin protein. Length = 188 Score = 78.2 bits (184), Expect = 3e-16 Identities = 32/84 (38%), Positives = 54/84 (64%) Frame = +2 Query: 524 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 703 ++ +Y + +++ P+P+VS VVEPYN+ L+ H +E++D + +DNEA+YDIC R Sbjct: 50 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFR 109 Query: 704 NLDIERPTYTNLNRLIGQIXSSIT 775 L + P+Y +LN L+ S +T Sbjct: 110 TLKVPNPSYGDLNHLVSLTMSGVT 133 Score = 41.5 bits (93), Expect = 3e-05 Identities = 18/33 (54%), Positives = 22/33 (66%) Frame = +1 Query: 376 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 474 HYT G E+VD VLD +RK + C LQGF + H Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTH 33 >AY334009-1|AAR01134.1| 188|Anopheles gambiae beta-tubulin protein. Length = 188 Score = 78.2 bits (184), Expect = 3e-16 Identities = 32/84 (38%), Positives = 54/84 (64%) Frame = +2 Query: 524 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 703 ++ +Y + +++ P+P+VS VVEPYN+ L+ H +E++D + +DNEA+YDIC R Sbjct: 50 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFR 109 Query: 704 NLDIERPTYTNLNRLIGQIXSSIT 775 L + P+Y +LN L+ S +T Sbjct: 110 TLKVPNPSYGDLNHLVSLTMSGVT 133 Score = 41.5 bits (93), Expect = 3e-05 Identities = 18/33 (54%), Positives = 22/33 (66%) Frame = +1 Query: 376 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 474 HYT G E+VD VLD +RK + C LQGF + H Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTH 33 >AY334008-1|AAR01133.1| 188|Anopheles gambiae beta-tubulin protein. Length = 188 Score = 78.2 bits (184), Expect = 3e-16 Identities = 32/84 (38%), Positives = 54/84 (64%) Frame = +2 Query: 524 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 703 ++ +Y + +++ P+P+VS VVEPYN+ L+ H +E++D + +DNEA+YDIC R Sbjct: 50 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFR 109 Query: 704 NLDIERPTYTNLNRLIGQIXSSIT 775 L + P+Y +LN L+ S +T Sbjct: 110 TLKVPNPSYGDLNHLVSLTMSGVT 133 Score = 41.5 bits (93), Expect = 3e-05 Identities = 18/33 (54%), Positives = 22/33 (66%) Frame = +1 Query: 376 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 474 HYT G E+VD VLD +RK + C LQGF + H Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTH 33 >U50468-1|AAA93472.1| 91|Anopheles gambiae protein ( Anopheles gambiae putativetubulin alpha chain mRNA, complete cds. ). Length = 91 Score = 50.4 bits (115), Expect = 6e-08 Identities = 20/22 (90%), Positives = 21/22 (95%) Frame = +1 Query: 58 MRECISVHVGQAGVQIGNACWE 123 MRECISVHVGQAGVQIGN CW+ Sbjct: 1 MRECISVHVGQAGVQIGNPCWD 22 Score = 41.1 bits (92), Expect = 4e-05 Identities = 26/68 (38%), Positives = 28/68 (41%) Frame = +2 Query: 113 PAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTYPVXXXXXXXXXXXXXX 292 P T WS AS+ RCP+TR S ST SS R AST PV Sbjct: 19 PCWDCTVWSMASNRTVRCPRTRRSEAVMTRSTPSSPRLAQASTCPVPCSSIWSRPSSMRC 78 Query: 293 XXAHTDSC 316 A T SC Sbjct: 79 APARTASC 86 >AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase protein. Length = 1248 Score = 23.8 bits (49), Expect(2) = 0.48 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = +2 Query: 164 CPQTRPSGVETILSTLSSARPELAS 238 C RPS ++ ++ S RP+LA+ Sbjct: 164 CGSARPSRIDVAFASPSICRPDLAA 188 Score = 21.8 bits (44), Expect(2) = 0.48 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +2 Query: 107 VMPAGSFTAWSTASSLMARCPQTRPSGV 190 V+ AG F AW TA +T+P G+ Sbjct: 116 VLLAGDFNAWHTAWG----SERTKPKGI 139 >AF515521-1|AAM61888.1| 233|Anopheles gambiae glutathione S-transferase u1 protein. Length = 233 Score = 23.4 bits (48), Expect = 7.9 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = +2 Query: 476 PSVEVP-ALGSLPY*WERLSVDYGKKSKL 559 PS+ V AL +L +E +SVDYGK L Sbjct: 11 PSLAVRMALEALNIPYEHVSVDYGKAEHL 39 Database: mosquito Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 563,979 Number of sequences in database: 2352 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 832,882 Number of Sequences: 2352 Number of extensions: 17996 Number of successful extensions: 53 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 53 length of database: 563,979 effective HSP length: 63 effective length of database: 415,803 effective search space used: 80665782 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -