Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0175
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0248 - 23891684-23892064 35 0.060
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 33 0.24
12_02_0063 + 13098519-13099585,13099759-13099906 33 0.32
04_01_0615 - 8060085-8060972 32 0.43
02_05_0158 - 26362259-26362695,26363732-26363903 31 0.74
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 31 0.98
09_06_0280 + 22010270-22011407,22011890-22013097 31 0.98
07_03_0439 + 18212584-18213065,18214164-18215010 31 0.98
08_02_0819 - 21529913-21530064,21531016-21531082,21531284-215313... 29 3.0
12_02_0589 + 20850249-20850491,20850583-20851839 29 4.0
07_03_0907 - 22490158-22490555,22490647-22491250 29 4.0
04_04_1499 - 34006999-34007232,34007371-34007440,34007580-340076... 29 4.0
03_05_1129 - 30595580-30595771,30596119-30597162 29 4.0
11_01_0503 - 3897466-3897996 29 5.2
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88... 29 5.2
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 29 5.2
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 29 5.2
02_02_0183 + 7576901-7576908,7577666-7578176 29 5.2
05_03_0458 + 14280953-14281866,14281964-14282912 28 6.9
03_06_0316 + 33091194-33091370,33091451-33092155 28 6.9
03_02_1009 + 13189349-13189592,13189782-13189882,13191085-131910... 28 6.9
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 28 6.9
08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518... 28 9.2
03_06_0579 + 34870958-34874578 28 9.2
>04_04_0248 - 23891684-23892064
Length = 126
Score = 35.1 bits (77), Expect = 0.060
Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 5/120 (4%)
Frame = +2
Query: 347 MKTSATFSGTAGTEKPPAISAAPDL-PTTXSPAS----ACGLIRFRSAKTKK*QTDSAAQ 511
M T TA T PA+ AA + P + A A RFRSA + AA
Sbjct: 1 MATQNRSETTAATRIWPAVVAAARMRPAAATGARMQSVAAAATRFRSAAAAASRMRLAAA 60
Query: 512 PPVRSPTLARSAVTLIPKIAVNITSVSXALPASTVAPSEPFSRSETPTALVTAKTPKTFP 691
R A +A+ L+P A T+ PA+ AP P + + P TA + P
Sbjct: 61 AATRMRPAAAAAMPLLPSAA---TAARMWPPAAKAAPMHPAAATAAPLQSATASVVRMCP 117
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 33.1 bits (72), Expect = 0.24
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +2
Query: 428 TXSPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAV---TLIPKIAVNITSVSXA 598
T P + R K QT +A +PP+R A + + T +P + N +SVS
Sbjct: 261 TSPPHKNSHIPRALPPKESSSQTGTAHKPPIRGSAPAETPLPQNTNMPAVPKNGSSVSHD 320
Query: 599 LPASTVAPSEPFSRS 643
P STVA +P + S
Sbjct: 321 RPPSTVAAPKPATSS 335
>12_02_0063 + 13098519-13099585,13099759-13099906
Length = 404
Score = 32.7 bits (71), Expect = 0.32
Identities = 22/79 (27%), Positives = 34/79 (43%)
Frame = +2
Query: 392 PPAISAAPDLPTTXSPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIA 571
PP AA P +P +I + A +K A+PP + + + AV+ P
Sbjct: 183 PPPYPAAQAAPQAPAPPRQVPVITQQQAPPQKRPAAPVAEPPCATKKM-KGAVSAKPMAP 241
Query: 572 VNITSVSXALPASTVAPSE 628
+ + S A P VAPS+
Sbjct: 242 QSSVTASAAPPRCAVAPSQ 260
>04_01_0615 - 8060085-8060972
Length = 295
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = +2
Query: 395 PAISAAPDLPTTXSPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAV 574
P +A P LP++ A+ + S+ QP V +P+ S + +
Sbjct: 70 PLATAPPSLPSSLFAATVEETVMTASSPLPLPHPAEVLQPLVAAPSSQMSFASKAAAVLP 129
Query: 575 NITSVSXALPASTVAPSEP 631
+T+V ALP + PS+P
Sbjct: 130 CLTTVGPALPGAPSTPSQP 148
>02_05_0158 - 26362259-26362695,26363732-26363903
Length = 202
Score = 31.5 bits (68), Expect = 0.74
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 563 KIAVNITSVSXALPASTVAPSEPFSRSE-TPTALVTAKTPKTFPDARTT 706
K+AV +++ + P T + S P + + TP++ TP + PDA TT
Sbjct: 117 KLAVTVSAAAATTPTPTASSSPPSTATPATPSSDPGMDTPSSTPDATTT 165
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 31.1 bits (67), Expect = 0.98
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Frame = +2
Query: 332 TASSLMKTSATFSGT-AGTEKPPAI-SAAPDLPTTXSPASACGLIRFRSAKTKK*QTDSA 505
T SS+M++SAT GT A + P A+ SA P P T +P + S T + TDSA
Sbjct: 152 TDSSMMQSSAT--GTQAAVQGPSAVASAVPMTPVTAAPTTV------PSTTTARAGTDSA 203
Query: 506 AQPPVRSPTLARSAVTLIPKIAVNITSVSXALPASTVAPSEP 631
T S V + P + V T+ S +AP P
Sbjct: 204 IAVASAGSTTV-STVAVAPSLPVAPTAAS---QGQALAPQTP 241
>09_06_0280 + 22010270-22011407,22011890-22013097
Length = 781
Score = 31.1 bits (67), Expect = 0.98
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Frame = +1
Query: 478 NEEVANGFGCPAPGEVSNAGSFSRHAH----PEDCRKYYICLXGVAREYGCPIGTVFKIG 645
N + AN + CP PGE + S +++ ++ R Y+C + G + G
Sbjct: 275 NNQAANNWSCPTPGEARRSACISNNSYCHNVTDNYRSGYVCRCDDGYD-----GNPYVAG 329
Query: 646 DADGTGNCEDPENVPGC 696
CE P+ GC
Sbjct: 330 GCQDINECERPKE-HGC 345
>07_03_0439 + 18212584-18213065,18214164-18215010
Length = 442
Score = 31.1 bits (67), Expect = 0.98
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Frame = +2
Query: 269 LSAERGHSLSPQSPLLTVR-DCTASSLMKTSATFSGT---AGTEKPPAISAAPDLPTTXS 436
L+A H + P SP ++ D + +A S T A + PP+ ++A L T
Sbjct: 15 LAATSWHCVHPPSPTVSTHWDAASHEARGAAAASSPTSPRAASTNPPSATSAEPLHTCVF 74
Query: 437 PASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLAR 541
S G R + Q A+P + +P LAR
Sbjct: 75 SGSVAGPSRQAALSYLTTQPSRMARPLLAAPHLAR 109
>08_02_0819 -
21529913-21530064,21531016-21531082,21531284-21531373,
21531506-21531622,21532026-21532145,21532313-21533581
Length = 604
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +2
Query: 284 GHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTXSPAS 445
G + +PQ+ +VR CT+ SL + SA GTA T + A SA +T S +S
Sbjct: 47 GGTPAPQAAASSVRRCTSPSLSRASAA-EGTASTNR--AQSAERRRSSTPSSSS 97
>12_02_0589 + 20850249-20850491,20850583-20851839
Length = 499
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -3
Query: 292 AVSSLRTQRCEGSRSSRSSIWNLWRRKRDRCRRFSVRLHRCRTSSI 155
A SSL T S S R ++ +WR+ R+ R+FS ++C +S+
Sbjct: 270 AYSSLLT--LYASLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSL 313
>07_03_0907 - 22490158-22490555,22490647-22491250
Length = 333
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +2
Query: 557 IPKIAVNITSVSXALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTTMENWI*XRSA 736
+P +AV +V+ + V E + P + + KT P+A EN+ RSA
Sbjct: 95 VPVVAVPAPAVTMPMEVPVVPVPEAMAPEPIPVEVTVPEVVKTAPEAEEAEENFTISRSA 154
>04_04_1499 -
34006999-34007232,34007371-34007440,34007580-34007637,
34007940-34007979,34008183-34008259,34008366-34008582,
34008703-34009266
Length = 419
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 271 ECGERTQLEPPISTPHCSRLYGIF 342
+ GERT L PP H R++G+F
Sbjct: 144 DSGERTPLPPPSQQQHQDRIHGLF 167
>03_05_1129 - 30595580-30595771,30596119-30597162
Length = 411
Score = 29.1 bits (62), Expect = 4.0
Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +2
Query: 434 SPASACGLIRFRSAKTKK*QTDSA-AQPPVRSPTLARSAVTLIPK-IAVNITSVSXALPA 607
SP+ A L R + T + + A A PP S AR VTL P+ +A T+ + A P
Sbjct: 175 SPSGAWSLRDVRGSPTGSIEVELASAAPPEASGVEARCVVTLHPEALATEFTARNAASP- 233
Query: 608 STVAPSEPFS---RSETPTA 658
S VA S S R TP A
Sbjct: 234 SPVALSAAVSTHLRVSTPDA 253
>11_01_0503 - 3897466-3897996
Length = 176
Score = 28.7 bits (61), Expect = 5.2
Identities = 46/184 (25%), Positives = 70/184 (38%), Gaps = 1/184 (0%)
Frame = -1
Query: 699 LASGNVFGVFAVTSAVGVSDLENGSDGATVLAGNAXETDVIFTAIFGMSVTAERASVGDL 520
+A+ F V AV + DGA AG + G TA R +
Sbjct: 1 MAASPAFLVLAVLLCAAAAVARAADDGA---AGMTKFKVYFHDVVGGTKPTAIRVAQAAS 57
Query: 519 TGGWAAESVCYFFVFALRNLISPHADAGLSVVGKSGAALIAGGFSVPAVPENVALVFIRE 340
T G S + V A+ + ++ A + S VG++ + + N+ VF
Sbjct: 58 TNG---SSTFFGAVVAIDDPLTTDAASSSSEVGRAQGSYTFADQKTFGLLMNMNFVFTAG 114
Query: 339 DAVQSRTVRSGDWGLKLCPLSALNVVKVVAVLGQVFGICG-VESETVAAGFQFGYTVVAL 163
D S G + LSA+ + +V G+ G VE+ TV +G G T+V
Sbjct: 115 DHKGSTLAIVGRNEV----LSAVREMSIVGGSGKFRMARGYVEARTVDSGANSGETIVEY 170
Query: 162 PVFV 151
VFV
Sbjct: 171 TVFV 174
>11_01_0113 +
881806-881996,882831-882921,883140-883255,884489-885260
Length = 389
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 277 RTQRCEGSRSSRSSIWNLWRRKRDR 203
R RC G ++RS+ LWRR+R R
Sbjct: 20 RVSRCSGRPATRSAPSILWRRRRPR 44
>08_02_1508 +
27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Frame = +2
Query: 521 RSPTLARSAVTLIPKIAVNITSVSXA------LPASTVAPSEPFSRSETPTALVTAKTPK 682
R T S L+P + + S S + LP+ T+ +P R E+ T KTP
Sbjct: 251 RQTTSTESRTVLVPPPSAGMISTSFSSQREQPLPSETIRQDKPSPRKESNFFTTTEKTPS 310
Query: 683 T 685
T
Sbjct: 311 T 311
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +1
Query: 376 CWNGEASRYQCSPGLAYDRXSRVCMWADQVPECKNEEVANGFGCPAPGEVSNAGSFSRHA 555
CW G + RY+CSP VCM ++P + + P EV + G H
Sbjct: 77 CWRGLSRRYKCSPERT---VLSVCMLTGEMPRVQTSRLGKN-----PIEVDSDGGEDLHV 128
Query: 556 HPE 564
E
Sbjct: 129 DYE 131
>02_02_0183 + 7576901-7576908,7577666-7578176
Length = 172
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 301 GAQAVSSLRTQRCEGSRSSRSSIWNLWRRKRDRCRR 194
G V + +R EG S + W WRR+R RC R
Sbjct: 108 GGGGVGWMGMRRAEGGGSGSVARWRRWRRRR-RCGR 142
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 28.3 bits (60), Expect = 6.9
Identities = 32/130 (24%), Positives = 45/130 (34%), Gaps = 3/130 (2%)
Frame = +2
Query: 272 SAERGHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPP--AISAAPDLPTTXSPAS 445
+A S P SP + R+ S S S T T P S+ P++ P
Sbjct: 10 TASASSSYGPTSPPSSCRNAAPSPPSSNSTPTSSTTPTVPPSLTTTSSPSSSPSSPPPLP 69
Query: 446 ACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIP-KIAVNITSVSXALPASTVAP 622
T + PP SPT + SA +L P + +S + P S P
Sbjct: 70 PLQPTPPPLPPTTLSCSSHPTPPPPPSPTTSPSASSLPPVPTPRSASSSKCSAPTSAQTP 129
Query: 623 SEPFSRSETP 652
+ S S P
Sbjct: 130 TRFLSSSSPP 139
>03_06_0316 + 33091194-33091370,33091451-33092155
Length = 293
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Frame = +2
Query: 419 LPTTXSPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSXA 598
LP T +PA+A + +A K + +AA+P + A++ + A
Sbjct: 121 LPPTRAPAAAKPKAKPAAAAKPKPKPKAAAKPKAAAKPKAKAPAKSKAAAKPKAAAKPAA 180
Query: 599 LPASTVAPSEPFSRSETPTALVTAKT-PKTFPDAR 700
P + P P + P A AK P P A+
Sbjct: 181 KPKAAAKPKSPAKPAAKPKAAPKAKAKPAAKPKAK 215
>03_02_1009 +
13189349-13189592,13189782-13189882,13191085-13191090,
13191712-13191933,13192052-13192137,13192330-13192426,
13192817-13192909,13193031-13193186
Length = 334
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 269 LSAERGHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDL 421
L RG SP P T+S SAT +GT G + PP + + PD+
Sbjct: 33 LGLSRGAGPSPPPP---PSSSTSSFPAAASATAAGTGG-DAPPIVGSCPDM 79
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 27 LXSQYEFEVFISVSGRPR--RXCGPRVLQMPRRLRFLPSPHLL 149
L S F+ ++GR C PR + PR L +L SPH+L
Sbjct: 329 LTSNLTFQEAYDMTGRILVVTVCSPRKHEPPRCLNYLTSPHVL 371
>08_02_0110 +
12650328-12650552,12650827-12651423,12651480-12651857,
12651997-12652218,12652407-12652483,12652553-12652631,
12652920-12653105
Length = 587
Score = 27.9 bits (59), Expect = 9.2
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Frame = +2
Query: 350 KTSATFSGTAGTEKPPAISAAPDL-PTTXSPASACGLIRFRSAKTKK*QTDSAAQPPVRS 526
K T GT++PP I +P P SP + I S + +PPV S
Sbjct: 191 KNDIELGSTDGTDRPPRIPVSPSRPPVVASPRDS--PIASPSRPEPPVASPPGPEPPVAS 248
Query: 527 PTLARSAVTLIPKIAVNITS 586
P + V P + + S
Sbjct: 249 PPVPEPQVASPPVLEPPVAS 268
>03_06_0579 + 34870958-34874578
Length = 1206
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 696 ASGNVFGVFAVTSAVGVSDLENGSDGATVLAGNAXETD 583
+SG+V GVF T + DL + SDG+ + + D
Sbjct: 185 SSGSVVGVFDDTDVTTIGDLVSASDGSPLNVDKQGDQD 222
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,214,257
Number of Sequences: 37544
Number of extensions: 475142
Number of successful extensions: 1956
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1953
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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