Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0175
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    27   0.14 
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   2.3  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   2.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   4.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.4  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 438 GLSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQS 325
           GL   G SGAALIA       +PE   +V I  D +++
Sbjct: 301 GLLCGGSSGAALIAALKIAKDIPEEKRMVIILPDGIRN 338


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 331 YGIFPDENKCDVFWNC 378
           YG FP++ K   ++NC
Sbjct: 59  YGEFPEDEKLKCYFNC 74


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 629 PFSRSETPTALVTAKTPKT 685
           PF  S   T +VTA TP T
Sbjct: 4   PFLSSSVSTVIVTALTPST 22


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 712 LHSSPRIRERFRGLRSYQC 656
           LH +P +RE   G  +++C
Sbjct: 33  LHDNPSLREGLAGASTFRC 51


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
 Frame = +1

Query: 136 HHISCDKYWKCDNGV-----AELKTCGNGL-AFDATDSKYLTE 246
           H  SCD+ W  D G        ++ C   L  FD T  K L +
Sbjct: 134 HADSCDRLWVLDTGTIGIGNTTIQACPYTLNIFDLTSDKLLRQ 176


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
 Frame = -1

Query: 447 ADAGLSVVGKSGAALIAGGFSVPAV----PENVA 358
           + AG+ VVG + A+++AG  S+  V    PE++A
Sbjct: 9   SSAGVGVVGGTIASVVAGAASLTLVKAETPEHLA 42


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +1

Query: 646 DADGTGNCE-DPENVPGCEDYYGEL 717
           +A+G    E   EN+PG +DY   L
Sbjct: 246 EAEGAITVELQSENIPGFDDYMASL 270


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +1

Query: 646 DADGTGNCE-DPENVPGCEDYYGEL 717
           +A+G    E   EN+PG +DY   L
Sbjct: 336 EAEGAITVELQSENIPGFDDYMASL 360


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = +1

Query: 151 DKYWKCDNGVAELKTCGNG 207
           + YW+C++   +++  G G
Sbjct: 63  ENYWQCNDKKTDIEETGRG 81


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 145 SCDKYWKCDNGVAEL 189
           +CD+ W  D GV ++
Sbjct: 119 ACDRLWGVDTGVDDI 133


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 244 ENCDYLHNVECGE 282
           E CDY  N+  GE
Sbjct: 40  EECDYYQNLNLGE 52


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 296  SPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPD 418
            SP SP+L+VR    +  +  +ATF     T     +   PD
Sbjct: 1484 SPSSPVLSVRTQGQAPGIPPAATFLSPNSTTLVLRLHVWPD 1524


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 296  SPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPD 418
            SP SP+L+VR    +  +  +ATF     T     +   PD
Sbjct: 1480 SPSSPVLSVRTQGQAPGIPPAATFLSPNSTTLVLRLHVWPD 1520


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,175
Number of Sequences: 438
Number of extensions: 4585
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)