Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0175
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica...    33   0.15 
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica...    33   0.15 
At2g40070.1 68415.m04923 expressed protein                             30   1.9  
At1g72390.1 68414.m08373 expressed protein                             30   1.9  
At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ b...    29   2.5  
At4g14510.1 68417.m02236 expressed protein contains Pfam domain,...    29   3.3  
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi...    28   5.8  
At1g11660.1 68414.m01339 heat shock protein, putative strong sim...    28   5.8  
At5g38560.1 68418.m04662 protein kinase family protein contains ...    28   7.7  
At5g23700.1 68418.m02778 hypothetical protein                          28   7.7  
At5g01500.1 68418.m00064 mitochondrial substrate carrier family ...    28   7.7  

>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 176

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 33/120 (27%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
 Frame = +2

Query: 359 ATFSGTAGTEKPPAISAAPDLPTTXSPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLA 538
           A  +G A T  PP  + AP  PTT  PA+    +      T      + A PP   P   
Sbjct: 16  AGVTGQAPTS-PPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPV 74

Query: 539 RSAVTLIPKIAVNITSVSXALPASTVAP-------SEPFSRSETPTALVTAKTPKTFPDA 697
            S     P  A      S   P ++  P       + P +   +P A V A  P T PD+
Sbjct: 75  SSPPPASPPPATPPPVASPPPPVASPPPATPPPVATPPPAPLASPPAQVPAPAPTTKPDS 134


>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 191

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 33/120 (27%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
 Frame = +2

Query: 359 ATFSGTAGTEKPPAISAAPDLPTTXSPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLA 538
           A  +G A T  PP  + AP  PTT  PA+    +      T      + A PP   P   
Sbjct: 16  AGVTGQAPTS-PPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPV 74

Query: 539 RSAVTLIPKIAVNITSVSXALPASTVAP-------SEPFSRSETPTALVTAKTPKTFPDA 697
            S     P  A      S   P ++  P       + P +   +P A V A  P T PD+
Sbjct: 75  SSPPPASPPPATPPPVASPPPPVASPPPATPPPVATPPPAPLASPPAQVPAPAPTTKPDS 134


>At2g40070.1 68415.m04923 expressed protein
          Length = 607

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 38/142 (26%), Positives = 55/142 (38%), Gaps = 2/142 (1%)
 Frame = +2

Query: 290 SLSPQSPL--LTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTXSPASACGLIR 463
           S  P +P    TV   T  SL  + +T S T    KP  +S +  L ++    +A     
Sbjct: 202 SSRPSTPTSRATVSSATRPSLTNSRSTVSATT---KPTPMSRSTSLSSSRLTPTASKPTT 258

Query: 464 FRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSXALPASTVAPSEPFSRS 643
             +A++    T S      +S   +RS   L    A + T  S      T+ PS+  SRS
Sbjct: 259 -STARSAGSVTRSTPSTTTKSAGPSRSTTPLSRSTARSSTPTSRP----TLPPSKTISRS 313

Query: 644 ETPTALVTAKTPKTFPDARTTM 709
            TPT    A        A  T+
Sbjct: 314 STPTRRPIASASAATTTANPTI 335


>At1g72390.1 68414.m08373 expressed protein
          Length = 1088

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 1/112 (0%)
 Frame = +2

Query: 293 LSPQSPLLTVRDCTASSLMKTSATFS-GTAGTEKPPAISAAPDLPTTXSPASACGLIRFR 469
           +S QSP L+      S L   S  FS G+ GT      +A  D   T  PA         
Sbjct: 302 ISAQSPRLSAGGPPQSPLSSKSGEFSGGSMGTHYGAVAAAQKDKAVTSIPAIGATQSVGS 361

Query: 470 SAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSXALPASTVAPS 625
           SA     Q    AQ   +  T +     +I  +   ++  + ++P +  +PS
Sbjct: 362 SANEAMQQRQHQAQMAAKRRTNSLPKTQVISTVGSPVSVNTISVPVNARSPS 413


>At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ
           boundaries domain protein 11 (LBD11) identical to
           SP|Q9SK08 LOB domain protein 11 {Arabidopsis thaliana}
          Length = 229

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = +2

Query: 332 TASSLMKTSATF------SGTAGTEKPPAISAAPDLPTTXSPASACGLIRFRSA 475
           TAS++ K + T       S T+    PP+    P  P   SP +AC ++R R A
Sbjct: 11  TASAVAKVTETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCA 64


>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 932

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -3

Query: 355 CFHQGRCRTVSNSEEWRLGAQAVSSLRTQRCEGSRSSRSSIWNLWRR--KRDRCRRFSVR 182
           C   G   ++S    +R G   + +++   CEGS SS SS    W R  K+++ R   V 
Sbjct: 31  CKFHGTSSSIS-LRSYRFGFSFMKNVKRLSCEGSSSSSSSRNENWNRTQKQNQFRPSKVV 89

Query: 181 LHR 173
           L+R
Sbjct: 90  LNR 92


>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
           to DNA repair by nucleotide excision (NER) RAD23
           protein, isoform II GI:1914685 from [Daucus carota]
          Length = 368

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 485 K*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSXALPASTVAP--SEPFSRSET 649
           K +T S+A P    PT   ++      +A   T+ S A+PAS   P   +P ++S+T
Sbjct: 76  KSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNSTPVQEQPTAQSDT 132


>At1g11660.1 68414.m01339 heat shock protein, putative strong
           similarity to gb|Z70314 heat-shock protein from
           Arabidopsis thaliana and is a member of the PF|00012
           Hsp70 protein family
          Length = 773

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = -1

Query: 447 ADAGLSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQSRTVRSGDWGLKLCPLSALN 268
           AD+GLS+       L+  G  +PA+ + ++ +F RE     RTV + +   + C L    
Sbjct: 324 ADSGLSLDQIHSVELVGSGSRIPAISKMLSSLFKRE---LGRTVNASECVARGCALQCAM 380

Query: 267 VVKVVAV 247
           +  V  V
Sbjct: 381 LSPVFRV 387


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 24/93 (25%), Positives = 35/93 (37%)
 Frame = +2

Query: 401 ISAAPDLPTTXSPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNI 580
           +S  P LP    P+S          +T+   T  +A PPV  P     +   +   +   
Sbjct: 1   MSLVPPLPILSPPSSNSSTTAPPPLQTQP--TTPSAPPPVTPPPSPPQSPPPVVSSSPPP 58

Query: 581 TSVSXALPASTVAPSEPFSRSETPTALVTAKTP 679
             VS   P+S+  PS P   S  PT   +   P
Sbjct: 59  PVVSSPPPSSSPPPSPPVITSPPPTVASSPPPP 91


>At5g23700.1 68418.m02778 hypothetical protein
          Length = 572

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +2

Query: 512 PPVRSP---TLARSAVTLIPKIAVNITSVSXALPASTVAPSEPFSRSETPTALVTAKTPK 682
           PP   P   + AR   +  P I  NIT    ++ +S+      FSRS TP A      PK
Sbjct: 87  PPSSGPINGSFARRNRSHSPAIGRNITEQVTSVRSSSTGRPSTFSRSSTPNASPLWMPPK 146


>At5g01500.1 68418.m00064 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 415

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = -1

Query: 435 LSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQSRTVRSGDWGLKLCPLSALNVVKV 256
           LS+V K  A   AG F+  A     A +   +  +Q+  VR+G    K     A+  ++ 
Sbjct: 109 LSIVPKDAALFFAGAFAGAAAKSVTAPLDRIKLLMQTHGVRAGQQSAK----KAIGFIEA 164

Query: 255 VAVLGQVFGICG 220
           + ++G+  GI G
Sbjct: 165 ITLIGKEEGIKG 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,187,616
Number of Sequences: 28952
Number of extensions: 346728
Number of successful extensions: 1115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)