Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0174
         (776 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1J9V6 Cluster: ABC transporter ATP-binding protein; n=...    35   2.0  
UniRef50_UPI0000F2C24B Cluster: PREDICTED: hypothetical protein;...    33   8.0  
UniRef50_A5DBF0 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  

>UniRef50_Q1J9V6 Cluster: ABC transporter ATP-binding protein; n=12;
           Streptococcus|Rep: ABC transporter ATP-binding protein -
           Streptococcus pyogenes serotype M12 (strain MGAS2096)
          Length = 245

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 23/64 (35%), Positives = 33/64 (51%)
 Frame = +2

Query: 560 TRYVKNPIPFAVFQKYLSGKALSIST*LSVSIQMTFRHLHKLNSLCNVIGTYFSLRYLLS 739
           T + KN I F VFQ Y+   +L+I   +SV++ +      K+N L N     F+L   L 
Sbjct: 78  TSFRKNDIGF-VFQDYMLLDSLTIRENISVALSLKNVDSSKINDLINNYAKRFNLYEQLE 136

Query: 740 KYDY 751
           KY Y
Sbjct: 137 KYPY 140


>UniRef50_UPI0000F2C24B Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 466

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 20/54 (37%), Positives = 33/54 (61%)
 Frame = +2

Query: 242 LLSKALGVDFILIVIICVNVSPKYGSDTLINLGYCLRSLVSTFLQRTPAIRESL 403
           LL  ++G D  L+V++CV+   KY ++TL +LG+  R   +  +QR  A R +L
Sbjct: 374 LLQDSIGGDAKLLVLLCVSPCQKYLAETLQSLGFGSR---ARQVQRVQAKRRNL 424


>UniRef50_A5DBF0 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 198

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = +2

Query: 596 FQKYLSGKALSIST*LSVSIQMTFRHLHKLNSLCNVIGTYFSLRYLLSKYDYVVNQL 766
           F  YL G  ++    L V+   T RH H  +   N+IGTYF L  L +   Y+  QL
Sbjct: 66  FLHYLEGTLMTSVIGLVVTFSTTRRHKHLRDDFQNMIGTYF-LPELRNNLLYLTEQL 121


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,757,418
Number of Sequences: 1657284
Number of extensions: 11577886
Number of successful extensions: 21383
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21377
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)