Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0174
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0662 + 19296395-19296532,19296650-19296742,19296976-192971...    30   1.8  
02_04_0347 + 22193708-22193720,22194317-22194390,22195388-221961...    28   9.5  

>09_04_0662 +
           19296395-19296532,19296650-19296742,19296976-19297128,
           19297213-19297596
          Length = 255

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = -1

Query: 731 NISMRNTSRLHCINCLAYVNDGKSFEC 651
           N+ +RN +RLH INCL+++   + F+C
Sbjct: 33  NLDLRNLTRLHLINCLSHL---EVFDC 56


>02_04_0347 +
           22193708-22193720,22194317-22194390,22195388-22196132,
           22196203-22196417,22196505-22196786,22196870-22196998,
           22197088-22197267,22197538-22197645,22197888-22198094
          Length = 650

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 565 SSIKSYTFNXNLTYSYELSNESPHQNPRLSW 473
           SS+K    +  L Y    S+  PH+NP   W
Sbjct: 511 SSVKQLNVSHGLLYGRINSDSGPHRNPESKW 541


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,585,112
Number of Sequences: 37544
Number of extensions: 285321
Number of successful extensions: 401
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)