Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0173
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    31   0.13 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.13 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    29   0.52 
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    27   2.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   2.1  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    26   3.7  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    26   3.7  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   4.9  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   4.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   4.9  
SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.5  
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi...    25   8.5  

>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 239 KDGYRYILAEPDPHAPFRQEFDESNEWSGKPIPGWLYRPLC 361
           +D YRY   E +  A FR++F +SNE    P PG +Y   C
Sbjct: 650 RDDYRYS-PEIEFKAAFREKFLQSNEKVPFPRPGEIYEKRC 689


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 171 PFLPMGAPVSAALPTAGLRLPCLPFTLPAS 82
           P LPMGAP +  LP +    P LP  +PA+
Sbjct: 437 PSLPMGAPAAPPLPPSAPIAPPLPAGMPAA 466



 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 186 TSALRPFLPMGAPVSAALPTAGLRLPCLPFTLPASGTAIIS 64
           ++ + P LP G P +  LP A    P  P   PA+  A I+
Sbjct: 452 SAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIA 492



 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 114 SAGLRSAARPRPGLPSARKAVTPMSPL*NCPRTATPP 224
           S  + +   P P +P       P  PL N  RT+TPP
Sbjct: 382 SRAVSNPPAPPPAIPGRSAPALP--PLGNASRTSTPP 416


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 114 SAGLRSAARPRPGLPSARKAVTPMSPL*NCPRTATPPSIPS 236
           S+G R    P+   P++R+ V P +       T+ PPS+PS
Sbjct: 544 SSGTRRLGLPQRATPASRERVLPYTRSQAFHSTSLPPSLPS 584


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 317 WSGKPIPGWLYR 352
           W GKPIP WL++
Sbjct: 378 WDGKPIPFWLWK 389


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 183  SALRPFLPMGAPVSAALP-TAGLRLPCLPFTLPASGTAIISS 61
            SA RP +P   PVS ALP ++ +  P +  +   S TA  +S
Sbjct: 1065 SATRPQIPQPPPVSTALPSSSAVSRPPIATSAGRSSTAASTS 1106


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 344 LYRPLCPGGVLLALHDRAPQLRVAXDRLAV 433
           LY+  CP G+LL + +  P++ +    LA+
Sbjct: 111 LYKVSCPVGLLLVIFEARPEVIINITSLAI 140


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 167 KGRNADVTALKLPSHGYPTEHPFNKDGYRYILAE 268
           KGRN +   +   + G P +HP  +  Y  I A+
Sbjct: 211 KGRNEECMKILTRNAGLPADHPIMQKEYNAIQAD 244


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 123  GLRLPCLPFTLPASGTAIISSRCSNFQRII 34
            GL++ CLPF   ++  A+I+S  +  ++ +
Sbjct: 970  GLKIYCLPFFSSSNNLAVITSSLAKIEQTV 999


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +2

Query: 326 KPIPG-WLYRPLCPGGVLL 379
           K +PG W++R L PGG+ L
Sbjct: 368 KGLPGSWIFRKLTPGGIPL 386


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +3

Query: 126  RSAARPRPGLPSARKAVTPMSPL*NCPRTAT----PPSIPSTKTVT 251
            R A+ PRP  P +     P+S + + P +      PPS P +K V+
Sbjct: 956  RKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVS 1001


>SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 124

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 17/68 (25%), Positives = 25/68 (36%)
 Frame = +2

Query: 218 PTEHPFNKDGYRYILAEPDPHAPFRQEFDESNEWSGKPIPGWLYRPLCPGGVLLALHDRA 397
           PT    +KD Y + + EPD + P R  ++   +     +  W Y   C        H   
Sbjct: 29  PTTSLLSKDYYGHSIEEPDENNPTRWRYERPLD----TVRAWQYLIDCDENFKTKPHREQ 84

Query: 398 PQLRVAXD 421
            Q R   D
Sbjct: 85  NQYRPTAD 92


>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
           L34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 155 PIGKKGRNADVTALKLPSHGYPTEHPFN 238
           P  K  RN  + A      G+PT +PFN
Sbjct: 13  PAMKGARNISILAGGGTMRGFPTRNPFN 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,579,162
Number of Sequences: 5004
Number of extensions: 29382
Number of successful extensions: 93
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)