Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0173
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1006 + 29635372-29635442,29635544-29635589,29635672-296358... 32 0.23
01_06_0642 + 30811708-30811768,30812256-30812305,30812455-308129... 31 0.69
01_07_0108 - 41126074-41127342 30 0.92
04_04_1448 + 33679110-33679140,33679858-33680057,33680163-336802... 30 1.2
04_04_1057 - 30451759-30452523,30452627-30452701,30453180-304532... 30 1.2
12_01_0910 + 8858443-8859414 29 1.6
08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476... 29 1.6
07_01_0577 - 4286048-4286186,4286600-4286660,4286957-4287089,428... 29 1.6
06_03_0468 - 21083754-21083869,21083986-21084069,21085633-210859... 29 1.6
04_03_0826 + 20103105-20103697,20104222-20104391,20104487-201047... 29 1.6
03_05_0922 - 28835983-28836129,28836328-28836474,28836782-288369... 29 2.8
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 28 3.7
06_01_0745 + 5570821-5571496,5572205-5572322,5572410-5572571,557... 28 4.9
04_01_0516 + 6772617-6773042 28 4.9
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954... 27 6.5
03_06_0416 - 33780911-33781861 27 6.5
03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878... 27 6.5
03_02_0451 - 8606376-8607152 27 6.5
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 27 8.6
09_06_0184 - 21413275-21414267 27 8.6
04_04_0704 + 27401683-27401818,27402761-27402937,27402983-274030... 27 8.6
03_05_1046 - 29923870-29924128,29924727-29924785 27 8.6
02_03_0142 - 15676923-15677159 27 8.6
>03_05_1006 +
29635372-29635442,29635544-29635589,29635672-29635813,
29635878-29636653,29636750-29637370
Length = 551
Score = 32.3 bits (70), Expect = 0.23
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +3
Query: 99 RAGKVSAGLRSAARPRPGLPSARKAVTPMSPL*NCPRTATPPSIPSTK 242
R GKV A+ PG P RK P P P ATP + P+ +
Sbjct: 476 RVGKVGISFE-VAKDAPGWPPVRKTSVPAPPAEAAPAVATPAAPPAAE 522
>01_06_0642 +
30811708-30811768,30812256-30812305,30812455-30812926,
30813237-30813596,30813694-30814101,30814383-30814453,
30814553-30814629,30814741-30814888,30815878-30816039,
30816119-30816304
Length = 664
Score = 30.7 bits (66), Expect = 0.69
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +2
Query: 206 SHGYPTEHPFNKDGYRYILAEPDPHAPFRQEFDESNEWSGKPIPGWLYRPLCPGGVLLAL 385
SHGYP + GY +L P+ A F F E N G+ G +Y+ + P L+A+
Sbjct: 333 SHGYPYSPADSAIGYSRMLFTPENLAEFTNGFAEQN-LLGEGGFGCVYKGILPDNRLVAV 391
>01_07_0108 - 41126074-41127342
Length = 422
Score = 30.3 bits (65), Expect = 0.92
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = +2
Query: 113 KRRPAVGSAAETGAPIGKKGRNADVTALKLPSHGYPTEHPFNKDGYRYILAEPDPHAPFR 292
+R P + G I K + + LP+HG P + Y PD + PF
Sbjct: 236 RRSPELAGGNGGGYYITAKSIEVNHHQVPLPNHGAPLVVQLSSM-VPYTELRPDVYGPFV 294
Query: 293 QEFDESNEWSGKPIP 337
+ +DE +W K P
Sbjct: 295 KAWDEILQWPKKVAP 309
>04_04_1448 +
33679110-33679140,33679858-33680057,33680163-33680272,
33680372-33680591,33680672-33680794,33680892-33680960,
33681915-33682157,33682235-33682297,33682414-33682477,
33682740-33682810
Length = 397
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 114 SAGLRSAARPRPGLPSARKAVTPMSPL*NCPRTATPPSIPS 236
SAGL+S A P P +PS+ K RT TP ++PS
Sbjct: 155 SAGLQSPAMPSPSVPSSTKWGPFSGTKGKKTRTNTPLAVPS 195
>04_04_1057 -
30451759-30452523,30452627-30452701,30453180-30453254,
30453503-30453591,30454058-30454157,30454244-30454388,
30454609-30454658,30455033-30455114,30455200-30455282,
30455360-30455429,30455523-30455632,30455719-30455872,
30456639-30456796,30457338-30457517
Length = 711
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 83 LAGNVKGRQGKRRPAVGSAAETGAPIGKKGRN-ADVTALKLPSHGYPTEHPFNKDG 247
+ N G G PA G G+P+GK + + L +P H YP++H + G
Sbjct: 571 IPSNSTGMHGSGSPASGGIH--GSPLGKTPSSYSKRRGLPMPPHEYPSQHGQGRHG 624
>12_01_0910 + 8858443-8859414
Length = 323
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -1
Query: 177 LRPFLPMGAPVSAALPTAGLRLPCLPFTLPASGTAII-SSRC 55
L P LP+ P++AAL GL L +PF A A++ SS C
Sbjct: 158 LLPLLPLPFPLTAALAVLGLLL-LVPFWSLAGAAAVVESSAC 198
>08_02_0733 +
20546072-20546325,20546924-20547017,20547441-20547624,
20547722-20547831,20548328-20548423,20548525-20548679,
20548743-20548986,20549159-20549314,20549600-20549829,
20552213-20552316,20552420-20552505,20552776-20553066,
20553383-20553475,20553640-20553735,20553838-20553939,
20554196-20554266,20554784-20555035,20555786-20556529,
20557038-20557119,20557192-20557347,20557446-20557655,
20558282-20558665
Length = 1397
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 173 RNADVTALKLPSHGYPTEHPFNKDGYRYILAEPD 274
+N LKL S G+ E+ ++ GYRY+L +PD
Sbjct: 382 QNIVTLELKL-SRGWGGENAYHVGGYRYLLVDPD 414
>07_01_0577 -
4286048-4286186,4286600-4286660,4286957-4287089,
4287286-4287350,4288346-4288451,4288529-4288750,
4289619-4289852,4289948-4290037,4290605-4291507
Length = 650
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 126 RSAARPRPGLPSARKAVTPMSPL*NCPRTATPPSIPSTKTVTDTS 260
R AA P P P AV P P+ P +TPP+ P T+ S
Sbjct: 50 RHAATPPPPPPPPTPAVEPTLPI---PPASTPPTPPQPSASTEPS 91
>06_03_0468 -
21083754-21083869,21083986-21084069,21085633-21085920,
21087525-21087687
Length = 216
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 302 DESNEWSGKPIPGWLYRP 355
D S +GKPIPGW+ RP
Sbjct: 130 DLSTRLTGKPIPGWVNRP 147
>04_03_0826 + 20103105-20103697,20104222-20104391,20104487-20104716,
20104825-20104933,20104967-20105154,20105818-20105919,
20106114-20106395,20106504-20106625,20106708-20107020,
20107096-20107329,20107477-20107767,20107975-20108286
Length = 981
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 253 SVTVFVEGMLGGVAVRGQFQSGDIGVTAFLADGSPGLGRAADRRPALTLP 104
+VT VE ++ + GQF+ GD + A G P L R D+ L+ P
Sbjct: 928 AVTQLVEDVISEAILSGQFKPGDTIMVDTDATGKPCLSRLNDQTVQLSDP 977
>03_05_0922 -
28835983-28836129,28836328-28836474,28836782-28836910,
28837201-28837278,28841639-28841812
Length = 224
Score = 28.7 bits (61), Expect = 2.8
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 317 WSGKPIPGWLYR 352
W GKPIP WLY+
Sbjct: 110 WDGKPIPYWLYK 121
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 102 AGKVSAGLRSAARPRPGLPSARKAVTPMSPL*NCPRTATP 221
+G+ A R+AA P+P P+A A M+P + A+P
Sbjct: 61 SGQRDAAARAAAAPKPARPAAGAAKNFMAPTISAASKASP 100
>06_01_0745 +
5570821-5571496,5572205-5572322,5572410-5572571,
5572650-5572681,5573406-5573584,5573697-5573897
Length = 455
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 309 LSSNSCLKGACGSGSAKMYL*P-SLLKGCS 223
L++ +C++ +CG G K+Y P SL CS
Sbjct: 249 LTAGNCVQCSCGPGDLKLYCTPASLTASCS 278
>04_01_0516 + 6772617-6773042
Length = 141
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 411 WPXTGWPSRATAATDGWRATHGVSRGSW 494
W WPSRAT T+ A HG S G +
Sbjct: 92 WRSRRWPSRATTTTE-TAAAHGWSDGGY 118
>07_03_1090 +
23891294-23892222,23892317-23892516,23895241-23895482,
23895771-23896461,23896486-23896562
Length = 712
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 138 RPRPGLPSARKAVTPMSPL*NCPRTATPPSIPSTKTVTDTSW 263
RP P L + P+ PL P + PP PST +T T +
Sbjct: 129 RPLPLLKQPSPDLRPLPPL-KRPESQPPPPPPSTPPLTTTGY 169
>03_06_0416 - 33780911-33781861
Length = 316
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 247 TVFVEGMLGGVAVRGQFQSGDIGVTAFLADGSPGLG 140
T +V G G AVR + GD+ V L+ S G G
Sbjct: 217 TAYVNGRRVGYAVRREASEGDLAVMQLLSTVSVGAG 252
>03_05_0884 -
28487013-28487271,28487355-28487516,28487594-28487802,
28488490-28488630,28488876-28489071,28489207-28489379,
28490095-28490142,28490301-28490378,28490526-28490792,
28491689-28491842,28491928-28492064,28492459-28492536,
28493039-28493216,28493589-28493803,28494063-28494422,
28494497-28494973,28495561-28495665,28495838-28496020,
28496105-28496263,28496937-28497154,28497737-28497905,
28498262-28498568,28498699-28498826,28498902-28499060,
28499194-28499364,28500258-28500376,28500604-28500853,
28501007-28501759
Length = 1950
Score = 27.5 bits (58), Expect = 6.5
Identities = 26/81 (32%), Positives = 34/81 (41%)
Frame = -1
Query: 369 PPGHSGRYSQPGIGLPLHSLLSSNSCLKGACGSGSAKMYL*PSLLKGCSVG*PCEGSFRA 190
PP + +Q LHSLL+ L G+GS+ L LL + SF
Sbjct: 33 PPASASASAQRASRAHLHSLLALARLLPAGAGAGSS---LPAPLLAFLASHAFLSPSFWP 89
Query: 189 VTSALRPFLPMGAPVSAALPT 127
+ A PFL P+ AA PT
Sbjct: 90 QSFAPAPFLSRLLPLLAAAPT 110
>03_02_0451 - 8606376-8607152
Length = 258
Score = 27.5 bits (58), Expect = 6.5
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = +1
Query: 184 CHRSETALARLPHRASLQQRRLQIHLGGTRPARALQTGVRREQRVERQA 330
C + A+ P AS +RRL IH GGT A A R QRV A
Sbjct: 95 CLKGSDAVLNFPSSAS-SRRRLDIHRGGTDSA-AGDMSPRSIQRVAAAA 141
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 141 PRPGLPSARKAVTPMSPL*NCPRTATPPSIPSTKTVTDTSWRN 269
P P L S A TP +P + +++PPS PS+ + S R+
Sbjct: 65 PFPNL-SGEPAPTPRAPSRHATPSSSPPSTPSSASAPPPSGRH 106
>09_06_0184 - 21413275-21414267
Length = 330
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 141 PRPGLPSARKAVTPMSPL*NCPRTATPPSIP 233
P P LP++ ++ P + P ++TPPS P
Sbjct: 80 PAPALPTSMESTFPSPRPPSTPSSSTPPSSP 110
>04_04_0704 +
27401683-27401818,27402761-27402937,27402983-27403048,
27403139-27403219,27404089-27404207
Length = 192
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 302 DESNEWSGKPIPGWLYR 352
D S +GKPIPGW+ R
Sbjct: 106 DVSKNLTGKPIPGWVNR 122
>03_05_1046 - 29923870-29924128,29924727-29924785
Length = 105
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 235 EGMLGGVAVRGQFQSGDIGVTAFLADGSPGL 143
EG + G ++ G+ + G G+T + DGS G+
Sbjct: 26 EGGIEGGSITGEIEGGGNGMTGGIEDGSGGV 56
>02_03_0142 - 15676923-15677159
Length = 78
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Frame = -2
Query: 224 RWGSRARAVSER*HRRYGLSCRWEPRS----RPRCRPQACAYLAC 102
R G+R RA R +R G P + R RCR Q C AC
Sbjct: 29 RLGARRRAAGRRMGKRRGEEGTGTPGAGAAGRRRCRAQGCGLWAC 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,153,822
Number of Sequences: 37544
Number of extensions: 265667
Number of successful extensions: 1269
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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