Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0173
(504 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7480| Best HMM Match : DUF1299 (HMM E-Value=4.8) 86 1e-17
SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0) 30 0.94
SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_58957| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024) 29 1.6
SB_21462| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_53881| Best HMM Match : LSPR (HMM E-Value=1.7) 29 2.2
SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_27562| Best HMM Match : Chromo_shadow (HMM E-Value=4.6) 28 3.8
SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_51716| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_32109| Best HMM Match : Fz (HMM E-Value=0.0027) 28 5.0
SB_31772| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018) 28 5.0
SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9) 28 5.0
SB_16668| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6) 27 6.6
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69) 27 6.6
SB_58915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_32939| Best HMM Match : Kelch_2 (HMM E-Value=1.7e-18) 27 8.8
SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17) 27 8.8
SB_19133| Best HMM Match : Ribosomal_S25 (HMM E-Value=5.6) 27 8.8
SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0) 27 8.8
>SB_7480| Best HMM Match : DUF1299 (HMM E-Value=4.8)
Length = 131
Score = 86.2 bits (204), Expect = 1e-17
Identities = 48/93 (51%), Positives = 62/93 (66%)
Frame = +2
Query: 173 RNADVTALKLPSHGYPTEHPFNKDGYRYILAEPDPHAPFRQEFDESNEWSGKPIPGWLYR 352
+NA+VT P +E KDGYRY+LAE DP AP + FD W+GKPIPG LYR
Sbjct: 21 KNAEVT----PESDAESEE--KKDGYRYLLAEQDPTAP-KANFD-LEYWAGKPIPGDLYR 72
Query: 353 PLCPGGVLLALHDRAPQLRVAXDRLAVTGDRGY 451
VLL+++DRAPQL+++ DRL VTG++GY
Sbjct: 73 IKLHTEVLLSMNDRAPQLKLSDDRLTVTGEKGY 105
>SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 33.1 bits (72), Expect = 0.13
Identities = 20/48 (41%), Positives = 22/48 (45%)
Frame = +3
Query: 126 RSAARPRPGLPSARKAVTPMSPL*NCPRTATPPSIPSTKTVTDTSWRN 269
RS P P PS R TP P RT PPS S +T SWR+
Sbjct: 28 RSDRTPAP--PSRRSDRTPAPPSRRSDRTPAPPSRRSDQTPVPPSWRS 73
>SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 717
Score = 30.3 bits (65), Expect = 0.94
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 176 NADVTALKLPSHGYPTEHPFNKDGYRYILAEPDPHAPFRQEFDESNEWSGKPIP 337
N + LK P G H + + + E D + RQ DES+E +G P P
Sbjct: 578 NYTMHVLKTPETGQVVGHEGDSPPDKKLCVEADSPSERRQSVDESSENTGAPTP 631
>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 239 KDGYRYILAEPDPHAPFRQEFDESNEWSGKPI-PGWLYRPLCPGG 370
+DG+ YI E H+PFR N W G+ + L R L GG
Sbjct: 359 RDGFAYIATEGASHSPFRLR----NCWEGRSVRASSLLRQLAKGG 399
>SB_58957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 185 HRRYGLSCRWEPRSRPRCRPQACAYLACPSR 93
+R Y + RW PR R R + CA++ C SR
Sbjct: 227 NREYIEANRWLPRPRLSGRQRKCAFVKCASR 257
>SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024)
Length = 286
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -1
Query: 186 TSALRPFLPMGAPVSAALPTAGLRLPCLPFTLPASGTA 73
T+A P P AP + PT P T PA+G A
Sbjct: 127 TAATTPTTPTTAPTTPTTPTTAATTPTTAATTPAAGAA 164
>SB_21462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 171 PFLPMGAPVSAALPTAGLRLPCLPFTLPASGTAIIS 64
PFL MGA + ++PT + LP +P GT++ +
Sbjct: 369 PFLVMGAALFVSIPTMWILLPKIPAIQLTIGTSLFA 404
>SB_53881| Best HMM Match : LSPR (HMM E-Value=1.7)
Length = 331
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +2
Query: 260 LAEPDPHAPFRQEFDESNEWSGKPIPGWLYRPLCPGG 370
LA+P H P + S WS W P CPGG
Sbjct: 190 LAQPSRHPPLDRTLQISASWSP-----WQQNPTCPGG 221
>SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 233 FNKDGYRYILAEPDPHAPF-RQEFDESNEWSGKPIP 337
FNK +R A+PDP P+ + W KP+P
Sbjct: 1092 FNKFSFRISAAKPDPTKPYNKPAAPRRMPWVDKPLP 1127
>SB_27562| Best HMM Match : Chromo_shadow (HMM E-Value=4.6)
Length = 424
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +2
Query: 104 RQGKRRPAVGSAAETGAPIGKKGRNADVTALKLPSHGYP 220
R R P A +G+KGRN ++ L LP P
Sbjct: 241 RAATRPPRAAIRTSRAATVGRKGRNLALSRLLLPKRSSP 279
>SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 98 KGRQGKR-RPAVGSAAETGAPIGKKGRNADVTALKLPS 208
KGR+G++ + +G G P+G +GRN A P+
Sbjct: 931 KGRKGRKDKGRMGRKGHQGPPLGHQGRNKATRAATRPT 968
>SB_51716| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 126 RSAARPRPGLPSARKAVTPMS-PL*NCPRTATPPSIPSTKTV 248
R ARP LPS + PL P T TP S+PS + +
Sbjct: 83 RPVARPATTLPSLPSPPSQAEQPLLPSPPTGTPASVPSRRDI 124
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 177 TPMSPL*NCPRTATPPSIPSTKTVTDTSW 263
TPM P+ + P A PP++P T T+T SW
Sbjct: 909 TPMPPISSTPYQA-PPTLPPT-TLTTPSW 935
>SB_32109| Best HMM Match : Fz (HMM E-Value=0.0027)
Length = 263
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 141 PRPGL--PSARKAVTPMSPL*NCPRTATPPSIPSTKTVTDTSWRN 269
P PG+ PS++ +T SP N P + PP + + D S N
Sbjct: 161 PGPGVNTPSSKTDITTASPSSNTPDSQGPPGVYGRRNDADNSSGN 205
>SB_31772| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 182 DVTALKLPSHGYPTEHPFNKDGYR 253
D+ + +LPS G HPF KD YR
Sbjct: 39 DLISKRLPSTGPTMAHPFPKDCYR 62
>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
Length = 3561
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 286 GRVRVWFRQDVSVTVFVEGMLGGVAVRG--QFQSGDIGVTAFL 164
GRV V+FR++ + T F GG +V G +SG G T FL
Sbjct: 1813 GRVAVYFRKNETFTYFSYQSFGGKSVAGLENIESGGPG-TVFL 1854
>SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)
Length = 870
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 275 PHAPFRQEFDESNEWSGKPIPGWLYRPLCPGGVLLALHDRAPQLR 409
PH R + D N+ + +PIP L P P LH AP R
Sbjct: 725 PHDDHRTDSDTDNDDTPRPIPPALGVPTPPRKNSFGLHAMAPLYR 769
>SB_16668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +2
Query: 95 VKGRQGKRRPAVGSAAETGAPIGKKGRNADVTALKLPSHGYPTEHPFNKDGY 250
V+ RRP + S AET + K ++ D ++ + YP P N Y
Sbjct: 150 VRASPAYRRPILFSRAETPKAVLHKQKSRDGVSISAKNEFYPCIKPVNTHEY 201
>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
Length = 156
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -1
Query: 207 EGSFRAVTSALRPFLPMGAPVSAALPTAGLRLPCLPFTLPAS 82
E S A ++A P P AP + PTA P P PA+
Sbjct: 35 EASLTAASAA--PVTPTAAPAAPVTPTAAPAAPVTPTAAPAA 74
>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
Length = 404
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -1
Query: 207 EGSFRAVTSALRPFLPMGAPVSAALPTAGLRLPCLPFTLPAS 82
E S A ++A P P AP + PTA P P PA+
Sbjct: 192 EASLTAASAA--PVTPTAAPAAPVTPTAAPAAPVTPTAAPAA 231
>SB_58915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 126 RSAARPRPGLPSARKAVTPMSPL*NCPRTATPPSIPSTKTVTDTS 260
++ + P PS A TP +P+ P A PP P +DTS
Sbjct: 130 KATLKDLPNTPSQTLATTPTAPMVTTP--APPPPPPPPLIPSDTS 172
>SB_32939| Best HMM Match : Kelch_2 (HMM E-Value=1.7e-18)
Length = 493
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 156 GAPVSAALPTAGLRLPCLPFTLPASGTAII 67
G P+S +PT GL++ P LP A +
Sbjct: 350 GLPISEGIPTFGLKMQTRPQNLPGPREAAV 379
>SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17)
Length = 505
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 126 RSAARPRPGLPSARKAVTPMSPL*NCPRTATPPSIPSTKT 245
RS R + P + A SP T+TPP+I S KT
Sbjct: 306 RSLKRSKSPAPGSAAAARSRSPSPARSSTSTPPTISSVKT 345
>SB_19133| Best HMM Match : Ribosomal_S25 (HMM E-Value=5.6)
Length = 135
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 158 IGKKGRNADVTALKLPSHGYPTEHPFNKDGYRYILAEPDPHAPFRQEFDE 307
I K+ +T+ KLPSHG+ +H RY + + P + DE
Sbjct: 28 INKQQLTDILTSDKLPSHGFTCDHTQGHTRKRYAVLKEVPFIQVAEVEDE 77
>SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)
Length = 928
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 146 TGAPIGKKGRNADVTALKLPSHGYPTEHPFN 238
+G+P+ +GR D T L+ + Y E+PF+
Sbjct: 362 SGSPVHDRGRRFDQTNLRPMAEVYNAENPFD 392
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,127,200
Number of Sequences: 59808
Number of extensions: 262705
Number of successful extensions: 1033
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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