Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0173
(504 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g28920.1 68418.m03569 expressed protein 30 1.0
At5g06160.1 68418.m00687 splicing factor-related contains some s... 29 2.4
At3g09000.1 68416.m01053 proline-rich family protein 29 2.4
At2g16810.1 68415.m01927 F-box family protein (FBX8) contains F-... 29 2.4
At3g01513.1 68416.m00078 expressed protein ; expression supporte... 28 3.1
At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains... 28 4.1
At4g20920.1 68417.m03032 double-stranded RNA-binding domain (DsR... 28 4.1
At4g20910.1 68417.m03031 double-stranded RNA binding protein-rel... 28 4.1
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 4.1
At3g58210.1 68416.m06490 meprin and TRAF homology domain-contain... 28 4.1
At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transfera... 28 4.1
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 27 5.4
At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing p... 27 5.4
At1g52380.1 68414.m05911 Ran-binding protein 1 domain-containing... 27 5.4
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp... 27 5.4
At5g64450.1 68418.m08096 hypothetical protein contains Pfam prof... 27 7.2
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 27 7.2
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family... 27 7.2
At5g08580.1 68418.m01021 calcium-binding EF hand family protein ... 27 9.5
At3g58360.1 68416.m06505 meprin and TRAF homology domain-contain... 27 9.5
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 27 9.5
>At5g28920.1 68418.m03569 expressed protein
Length = 419
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 263 AEPDPHAPFRQEFDESNEWSGKPIPGWLYRPLCPGGVLLALHDR 394
A+ P +P +QE + EW K + G YR C G ++ +++
Sbjct: 11 AKAQPESPPQQELPKK-EWGTKMVKGVNYRAACQGALVYGAYEK 53
>At5g06160.1 68418.m00687 splicing factor-related contains some
similarity to splicing factor SP:Q12874 from [Homo
sapiens]
Length = 504
Score = 28.7 bits (61), Expect = 2.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 317 WSGKPIPGWLYR 352
W GKPIP WLY+
Sbjct: 390 WDGKPIPYWLYK 401
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 102 AGKVSAGLRSAARPRPGLPSARKAVT-PMSPL*NCPRTATPPSIPSTK 242
+G + + + PRP S++K V+ P +P P T T PSI S+K
Sbjct: 214 SGSARSATPTRSNPRPSSASSKKPVSRPATPT-RRPSTPTGPSIVSSK 260
>At2g16810.1 68415.m01927 F-box family protein (FBX8) contains F-box
domain PF:00646
Length = 295
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 209 HGYPTEHPFNKDGYRYILAEPDPHAPFRQEFD-ESNEWSGKPIP 337
H P+ N +G Y LA DPH FD S E++ +P
Sbjct: 233 HHVPSHLDLNMNGVLYFLAWTDPHTCMLVSFDVRSEEFNTMQVP 276
>At3g01513.1 68416.m00078 expressed protein ; expression supported
by MPSS
Length = 216
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -2
Query: 203 AVSER*HRRYGLSCRWEPRSRPRCRPQACAYLACPSRCRL 84
A +E+ R+ +C W P P + + + P RCRL
Sbjct: 89 AAAEKISERFPGNCLWSPLRSPAASKHSESSTSTPKRCRL 128
>At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains
Pfam profile: PF02362 B3 DNA binding domain; identical
to cDNA auxin response factor 4 (ARF4) GI:4102597
Length = 788
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 105 GKVSAGLRSAARPRPGLPSA 164
G++ G+R AARPR GLP +
Sbjct: 269 GELRLGIRRAARPRNGLPDS 288
>At4g20920.1 68417.m03032 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 870
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 162 PMGAPVSAALPTAGLRLPCLPFTLPASGTAIISSRC 55
P+G + AAL G R LP ++ A+ A I+SRC
Sbjct: 112 PLGGHLRAALQRDGERCGSLPVSVIATFDAKINSRC 147
>At4g20910.1 68417.m03031 double-stranded RNA binding
protein-related / DsRBD protein-related contains weak
similarity to Pfam profile PF00035: Double-stranded RNA
binding motif
Length = 942
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -1
Query: 162 PMGAPVSAALPTAGLRLPCLPFTLPASGTAIISSRC 55
P+GA + AAL G R +P ++ A+ A I+SRC
Sbjct: 121 PLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRC 156
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 147 PGLPSARKAVTPMSPL*NCPRTATPPS 227
PG P + + TP SP+ + P +TPP+
Sbjct: 543 PGSPPSPSSPTPSSPIPSPPTPSTPPT 569
>At3g58210.1 68416.m06490 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 330
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 251 RYILAEPDPHAPFRQEFDESNEWSGKPIPGWLYRPLCP 364
RY+L + H+ + +E+ +W + IPGW + P
Sbjct: 73 RYLLTIVNQHSDKISKRNEATKWFNQKIPGWGLSAMIP 110
>At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transferase
family protein similar to UDP-glucose
glucosyltransferase GI:453245 from [Manihot esculenta]
Length = 479
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 194 LKLPSHGYPTEHPFNKDGYRYILAEPDPHAPFRQEFDESNEWSGKPIPGWL 346
L LPS+ Y T + +YI PD H EFD S+ P+PG++
Sbjct: 141 LNLPSYIYLTCNARYLGMMKYI---PDRHRKIASEFDLSSGDEELPVPGFI 188
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 141 PRPGLPSARKAVTPMSPL*NCPRTA-TPPSIPST 239
P P LPS A P SP P + PP++P+T
Sbjct: 34 PTPTLPSPSPATKPPSPALKPPTPSYKPPTLPTT 67
>At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing
protein similar to brahma associated protein 60 kDa
[Drosophila melanogaster] GI:3378134, SWI/SNF-related,
matrix-associated, actin-dependent regulator of
chromatin D1 [Homo sapiens] GI:4566530; contains Pfam
profile PF02201: BAF60b domain of the SWIB complex
Length = 534
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 181 GVTAFLADGSPGLGRAADRRPALTLP 104
G+T A GSPG+G P+LT P
Sbjct: 77 GMTMNQAQGSPGIGGLGPSSPSLTTP 102
>At1g52380.1 68414.m05911 Ran-binding protein 1 domain-containing
protein / RanBP1 domain-containing protein weak
similarity to SP|Q09717 Ran-specific GTPase-activating
protein 1 (Ran binding protein 1) (RANBP1) (Spi1-binding
protein) {Schizosaccharomyces pombe}; contains Pfam
profile PF00638: RanBP1 domain
Length = 440
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 162 PMGAPVSAALPTAGLRLPCLPFTLPAS 82
P APV+A+ P AG++L +P T PAS
Sbjct: 62 PSAAPVAASNPFAGIQL--VPTTAPAS 86
>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein similar to human splicing
factor GB:CAA59494 GI:899298 from [Homo sapiens];
contains Pfam profile PF01805: Surp module
Length = 735
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 141 PRPGLPSARKAVTPMSPL*NCPRTATPPSI 230
PRPG+P+ R P + N PR PPS+
Sbjct: 536 PRPGVPTVRPLPPPQNLALNLPR--PPPSV 563
>At5g64450.1 68418.m08096 hypothetical protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 181
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 245 GYRYILAEPDPHAPFRQEFDESNEW 319
GY +LAEP H P F ES+EW
Sbjct: 123 GYNVLLAEPLEHIP----FTESSEW 143
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 27.1 bits (57), Expect = 7.2
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 87 PAT*RAGKVSAGLRSAARPRPGLPSARKAVTPMSPL*NCPRTATP-PSIP-STKTVTDTS 260
PAT G ++ S P P+ K+ +P+SP + P T+ P P P S+ T+ +S
Sbjct: 195 PATSPPGSMAPKSGSPVSPTTSPPAPPKSTSPVSPS-SAPMTSPPAPMAPKSSSTIPPSS 253
>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
protein
Length = 635
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -1
Query: 183 SALRPFLPMGAPVSAALPTAGLRLP--CLPFTLPASGTAIISS 61
S PF PM APV A+ + P C+P P+SG+++ +S
Sbjct: 309 SLFSPFGPMQAPVQASASSTSTFPPFGCVP-PSPSSGSSLFNS 350
>At5g08580.1 68418.m01021 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 391
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 170 GRNADVTALKLPSHGYPTEHPFNKDGYRYILAEPD 274
G +DV L + S +PTEH + K YI+++ D
Sbjct: 317 GYLSDVELLPIISKIHPTEHYYAKQQADYIISQAD 351
>At3g58360.1 68416.m06505 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 298
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +2
Query: 167 KGRNADVTALKLPSHGYPTEHPFNKDGYRYILAEPDPHAPFRQEFDESNEWSGKPIPGW 343
KG N D L L Y + P + RY+L + ++ R + +E +W P W
Sbjct: 43 KGNNVDYLFLYLEVADYESLSPEWRRHARYLLNVVNQNSVKRSKQNEEQKWFDVQSPRW 101
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 191 ALKLPSHGYPTEHPFNKDGYRYILAEPDPHAPFRQEFD 304
A+++ GYPT PFN+ R+ + P+ E D
Sbjct: 658 AIRISCAGYPTRKPFNEFLTRFRILAPETTKSSYDEVD 695
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,758,316
Number of Sequences: 28952
Number of extensions: 173606
Number of successful extensions: 616
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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