Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0171
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 34 0.020
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 33 0.047
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 32 0.081
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 32 0.11
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.14
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 30 0.33
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.43
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.57
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.57
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 28 1.3
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 28 1.8
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 28 1.8
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 27 3.1
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 27 3.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.0
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 5.4
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 26 5.4
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 7.1
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 7.1
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 7.1
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.4
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 25 9.4
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 25 9.4
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 34.3 bits (75), Expect = 0.020
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 1/129 (0%)
Frame = +2
Query: 284 SAERGHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASAC 463
S+E + S QS +T + KT A+ T T + SA + T ++ +A
Sbjct: 226 SSESTIANSDQSSFITYESTQNPTANKTDASQQSTESTSS--SASAYSYITTLQTATTAQ 283
Query: 464 GLIRFRSAKTKK*Q-TDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSE 640
+ T T S P + S + S + P +A++ +S + AST A +
Sbjct: 284 QTTSENTYSTSGPNLTTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANT 343
Query: 641 PFSRSETPT 667
SRS PT
Sbjct: 344 IISRSSKPT 352
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 33.1 bits (72), Expect = 0.047
Identities = 34/146 (23%), Positives = 58/146 (39%)
Frame = +2
Query: 281 LSAERGHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 460
+S S+ PQS +ASS T +T S +S + +P+T S +
Sbjct: 468 VSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPS 527
Query: 461 CGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSE 640
+I S T S++ P S + S++T I + + S S++ S
Sbjct: 528 SSII--SSPMTS--VLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSS 583
Query: 641 PFSRSETPTALVTAKTPXTXPDARTT 718
S S T ++ ++ T T A T+
Sbjct: 584 TSSPSSTSLSISSSSTSSTFSSASTS 609
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 32.3 bits (70), Expect = 0.081
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Frame = +2
Query: 353 SLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPV 532
++M T+A + +A T A+ D+ ++ + S+ ++ T T AA V
Sbjct: 139 TVMYTTAVYGDSATTPAASEAQASSDILSSLASLSSASTDNLAASVTP---TTVAAS--V 193
Query: 533 RSPTLARSAVTLIPKIAVNITS-VSRALPASTVAPSEPFSRSE-TPTALVTAKTPXTXPD 706
S SA I + + TS VS +P+S ++ + P S SE TP + A + +
Sbjct: 194 ASSVDTDSASATISSVVDSATSSVSTVIPSSIISAAPPDSASESTPASTSYASSTTSATS 253
Query: 707 ARTTXG 724
TT G
Sbjct: 254 TSTTSG 259
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 31.9 bits (69), Expect = 0.11
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = +2
Query: 524 PPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKTPXTXP 703
P +RS +L S V LIP + + + S + PAS P S S + + V + P P
Sbjct: 439 PSIRSLSLRPSQVPLIPPLKCDPNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMPH-KP 497
Query: 704 DARTTXGXLDLKAIRKN 754
+++ G + + + R++
Sbjct: 498 ASQSNVGPVRISSNRRS 514
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.5 bits (68), Expect = 0.14
Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Frame = +2
Query: 221 SLSTPQIPNXXXXXXXXXXXLSAERGHSL----SPQSPLLTVRDCTASSLMKTSATFSGT 388
SLST IP+ LS+ S S S +++ ++SS TS+T S +
Sbjct: 234 SLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSS 293
Query: 389 AGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTL 568
+ + P +++ ++ S +S + S+ + + ++ P S T++ S+ +
Sbjct: 294 SSSSSSPTSTSSTISSSSSSSSSFSSTL---SSSSMSSSSSFSSSPTSSSSTISSSSSSP 350
Query: 569 IPKIAVNITSVSRALP--ASTVAPSEPFSRSETPTALVTAKTP 691
+ TS S++ +STV+ S S S ++ ++ P
Sbjct: 351 SSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRP 393
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 30.3 bits (65), Expect = 0.33
Identities = 32/140 (22%), Positives = 57/140 (40%)
Frame = +2
Query: 296 GHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASACGLIR 475
GH+ + S T TA+S + +SAT S T+ + + D+ T PAS+
Sbjct: 141 GHASASTSIPSTAITVTANSTIYSSATSSFPYSTDVSVSTGTSTDIVTLPPPASSTSSFS 200
Query: 476 FRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRS 655
T + S+ SP S + +P ++ S +L +S+V P+ + +
Sbjct: 201 -TITNTSMIPSSSSFTTTTGSPYYNTS--SFLPSSVIS----SASLSSSSVLPTSIITST 253
Query: 656 ETPTALVTAKTPXTXPDART 715
TP + ++ P T
Sbjct: 254 STPVTVSSSSLSSFTPSYST 273
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.43
Identities = 44/187 (23%), Positives = 68/187 (36%), Gaps = 8/187 (4%)
Frame = +2
Query: 182 TTV*PN*KPAATVSLSTPQIPNXXXXXXXXXXXLSAERGHSLSPQSPLLTVRDCTASSLM 361
T V P P +T S STP P ++ G S SP T CT S+ +
Sbjct: 299 TPVTPTVPPTSTSSTSTPPPPAS-----------TSSTGTSSSPLPSTST--SCTTSTSI 345
Query: 362 KTSATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVR-- 535
+ + PP +++ P + S+ G T T S + PP
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNS 405
Query: 536 ----SPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSE--TPTALVTAKTPXT 697
+PT+ ++ + P N T+ + ST S P + + T T++ TP T
Sbjct: 406 TTPVTPTVPPTS-SSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVT 464
Query: 698 XPDARTT 718
TT
Sbjct: 465 STPLTTT 471
Score = 27.1 bits (57), Expect = 3.1
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 3/128 (2%)
Frame = +2
Query: 317 SPLLTVR-DCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKT 493
SPL T CT S+ + + + PP +++ P + S+ G T
Sbjct: 276 SPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPST 335
Query: 494 KK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSV--SRALPASTVAPSEPFSRSETPT 667
T S + PP + T +P + + TS A +ST S P + T
Sbjct: 336 STSCTTSTSIPPTGNST--TPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSC 393
Query: 668 ALVTAKTP 691
T+ P
Sbjct: 394 TTSTSIPP 401
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.5 bits (63), Expect = 0.57
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +2
Query: 395 TEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPT-LARSAVTLI 571
T P S +LPT + S +S + QT +PP SPT + ++ ++
Sbjct: 135 TTFPSTTSITENLPTIDPTRSTRSSSHIQSLSPESKQTSDGHRPP--SPTSITTTSTSID 192
Query: 572 PKIAVNITSVSRALPASTVAPSEPFSRSETPT 667
P +A + S +T + P SR PT
Sbjct: 193 PSVAFSSKST-----LATTRTNAPLSRPSQPT 219
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.5 bits (63), Expect = 0.57
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 7/127 (5%)
Frame = +2
Query: 365 TSATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPT 544
TS+ F+ T+G P + ++ P +T +P S F + T T SA+ P S
Sbjct: 621 TSSGFNTTSGL--PTSSASTPLSNSTVAPTSTFTSSGFNT--TSGLPTSSASTPSSNSSI 676
Query: 545 LARSAVT---LIPKIAVNITSVSRALPASTVAPSEPFSRS--ETPTALVTA--KTPXTXP 703
+ S T + +S S L STVAP+ F+ S T + L T+ TP +
Sbjct: 677 VPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSVSTPLSNS 736
Query: 704 DARTTXG 724
A + G
Sbjct: 737 SAYPSSG 743
Score = 26.6 bits (56), Expect = 4.0
Identities = 27/115 (23%), Positives = 53/115 (46%)
Frame = +2
Query: 344 TASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQ 523
T+SSL +SAT S A + + A+ + ++ +S+ S+ T S++
Sbjct: 105 TSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSST 164
Query: 524 PPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKT 688
S T SA + +++ T+ S + +S++A S S + T +A T+ +
Sbjct: 165 NSTTSATPTSSATS----SSLSSTAASNSATSSSLASS---SLNSTTSATATSSS 212
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Frame = +1
Query: 154 ISCDKYWKCDN----GVAELKTCGNGLAFDATDS--KYLTENCDYLHN 279
+ CD+ W C+N G+ L C NG+ +D K L D L N
Sbjct: 30 LKCDRVWPCENCKKRGIPNL--CPNGILVSVSDKLIKLLLSRIDTLQN 75
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -2
Query: 698 TXSGSSQLPVPSASPILKTVPM 633
T + S++LPVPS +PIL T P+
Sbjct: 50 TSTLSNKLPVPSTNPILTTEPI 71
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 27.9 bits (59), Expect = 1.8
Identities = 22/97 (22%), Positives = 45/97 (46%)
Frame = +2
Query: 380 SGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSA 559
S A + + A SA +PT+ S + ++ S SAA V +P ++ +A
Sbjct: 202 SSVASSSEISAGSATSYVPTSSSSIALSSVVASASV--------SAANKGVSTPAVSSAA 253
Query: 560 VTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTA 670
+ ++ ++S + +ST++ + S S +PT+
Sbjct: 254 ASSSAVVSSVVSSATSVAASSTISSATSSSASASPTS 290
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 305 LSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAP 427
L+ Q+PL + D A+ + +T G+AGT + A+ +P
Sbjct: 102 LTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 305 LSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAP 427
L+ Q+PL + D A+ + +T G+AGT + A+ +P
Sbjct: 102 LTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.0
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = +2
Query: 515 AAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKTPX 694
+++PP R P+L+ A IP + S P +AP S P T+K P
Sbjct: 238 SSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPV-----SMNPAINSTSKPPL 292
Query: 695 TXPDARTTXGXL 730
P +R + L
Sbjct: 293 PPPSSRVSAAAL 304
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 509 DSAAQPPVRSPTLARSAV-TLIPKIAVNITSVSRALPASTVAPSEPFS 649
+S+AQ P A SA T P TS AST++PS PFS
Sbjct: 349 NSSAQSPHPRVFSANSAFSTTSPPPLTPSTSRDYPFSASTISPSTPFS 396
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 178 CDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVEC 288
C N V LK NG + S+ L+E C Y N C
Sbjct: 374 CSNAVKNLKCSANGTPSGSKISQVLSELC-YYDNKAC 409
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 7.1
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Frame = +2
Query: 341 CTASSLMKTSATFSG-TAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSA 517
C SSL KT + TA P I+ ++ + L+R K+ D+
Sbjct: 314 CELSSLSKTDISLPFITADATGPKHINM--EISRAQFEKLVDPLVRRTIDPCKRALKDAN 371
Query: 518 AQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSE 640
Q + + +T +P++ + S+ + PA +V P E
Sbjct: 372 LQTSEINEVILVGGMTRMPRVVETVKSIFKREPAKSVNPDE 412
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +2
Query: 575 KIAVNITSVSRALP---ASTVAPSEPFSRSETPTA 670
KI +T +P AS+ PSE SR+ETPTA
Sbjct: 478 KIVNPVTHTEVVVPQKNASSPNPSETNSRAETPTA 512
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 314 QSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 460
Q+ T T ++ ++T+ +GTAGTE A +A PTT + +A
Sbjct: 1191 QATTATETQATTATEVQTTTGATGTAGTE-TQATTATEVQPTTGATGTA 1238
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 314 QSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 460
Q+ T T ++ ++T+ +GTAGTE A +A PTT + +A
Sbjct: 1273 QATTATETQATTATEVQTTTGATGTAGTE-TQATTATEVQPTTGATGTA 1320
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 506 TDSAAQPPVRSPTLARSAV 562
++SAA PPV SP L RS +
Sbjct: 479 SNSAASPPVSSPGLRRSHI 497
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 352 FPDENKCDVFWNCW 393
F D N D +WNCW
Sbjct: 350 FADRNFYDDWWNCW 363
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 536 SPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTA 670
S A S T P A + T VS+ + AST +EP ++ TP++
Sbjct: 316 SADTAGSPATSPPATADSKTIVSKTISASTTQQTEPLQQT-TPSS 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,060
Number of Sequences: 5004
Number of extensions: 60447
Number of successful extensions: 223
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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