Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0171
(789 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 34 0.12
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 34 0.12
At2g40070.1 68415.m04923 expressed protein 33 0.29
At1g72390.1 68414.m08373 expressed protein 29 2.7
At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP... 29 2.7
At4g21670.1 68417.m03139 double-stranded RNA-binding domain (DsR... 29 3.5
At4g14510.1 68417.m02236 expressed protein contains Pfam domain,... 29 3.5
At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ b... 29 4.6
At5g38560.1 68418.m04662 protein kinase family protein contains ... 28 6.1
At1g46696.1 68414.m05216 hypothetical protein slight similarity ... 28 6.1
At1g11660.1 68414.m01339 heat shock protein, putative strong sim... 28 6.1
At5g41860.1 68418.m05097 expressed protein 28 8.1
At5g01500.1 68418.m00064 mitochondrial substrate carrier family ... 28 8.1
At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP... 28 8.1
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 28 8.1
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 28 8.1
At1g55430.1 68414.m06340 DC1 domain-containing protein contains ... 28 8.1
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 33.9 bits (74), Expect = 0.12
Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 7/120 (5%)
Frame = +2
Query: 371 ATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAA------QPPV 532
A +G A T PP + AP PTT PA+ + T + A PPV
Sbjct: 16 AGVTGQAPTS-PPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPV 74
Query: 533 RSPTLARSAVTLIPKIAVNITSVSRALPAS-TVAPSEPFSRSETPTALVTAKTPXTXPDA 709
SP A P +A V+ PA+ + P + +P A V A P T PD+
Sbjct: 75 SSPPPASPPPATPPPVASPPPPVASPPPATPPPVATPPPAPLASPPAQVPAPAPTTKPDS 134
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 33.9 bits (74), Expect = 0.12
Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 7/120 (5%)
Frame = +2
Query: 371 ATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAA------QPPV 532
A +G A T PP + AP PTT PA+ + T + A PPV
Sbjct: 16 AGVTGQAPTS-PPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPV 74
Query: 533 RSPTLARSAVTLIPKIAVNITSVSRALPAS-TVAPSEPFSRSETPTALVTAKTPXTXPDA 709
SP A P +A V+ PA+ + P + +P A V A P T PD+
Sbjct: 75 SSPPPASPPPATPPPVASPPPPVASPPPATPPPVATPPPAPLASPPAQVPAPAPTTKPDS 134
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 32.7 bits (71), Expect = 0.29
Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 2/141 (1%)
Frame = +2
Query: 302 SLSPQSPL--LTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASACGLIR 475
S P +P TV T SL + +T S T KP +S + L ++ +A
Sbjct: 202 SSRPSTPTSRATVSSATRPSLTNSRSTVSATT---KPTPMSRSTSLSSSRLTPTASKPTT 258
Query: 476 FRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRS 655
+A++ T S +S +RS L A + T SR T+ PS+ SRS
Sbjct: 259 -STARSAGSVTRSTPSTTTKSAGPSRSTTPLSRSTARSSTPTSRP----TLPPSKTISRS 313
Query: 656 ETPTALVTAKTPXTXPDARTT 718
TPT A A T
Sbjct: 314 STPTRRPIASASAATTTANPT 334
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 29.5 bits (63), Expect = 2.7
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 1/112 (0%)
Frame = +2
Query: 305 LSPQSPLLTVRDCTASSLMKTSATFS-GTAGTEKPPAISAAPDLPTTESPASACGLIRFR 481
+S QSP L+ S L S FS G+ GT +A D T PA
Sbjct: 302 ISAQSPRLSAGGPPQSPLSSKSGEFSGGSMGTHYGAVAAAQKDKAVTSIPAIGATQSVGS 361
Query: 482 SAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPS 637
SA Q AQ + T + +I + ++ + ++P + +PS
Sbjct: 362 SANEAMQQRQHQAQMAAKRRTNSLPKTQVISTVGSPVSVNTISVPVNARSPS 413
>At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP1
isozyme 3 (TOPP3) / phosphoprotein phosphatase 1
identical to SP|P48483 Serine/threonine protein
phosphatase PP1 isozyme 3 (EC 3.1.3.16) {Arabidopsis
thaliana}, phosphoprotein phosphatase 1 GB:AAA32838
GI:166799 from [Arabidopsis thaliana]
Length = 322
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 334 SRLYGIFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWADQVPECKN-EEVANG 510
+R+YG + DE K W + C P A E +CM PE K+ +E+ N
Sbjct: 128 NRIYGFY-DECKKRYSVRVWKIFTDCFNCLPVAALIDEKILCMHGGLSPELKHLDEIRN- 185
Query: 511 FGCPAPGEVSNAG 549
P P ++ + G
Sbjct: 186 --IPRPADIPDHG 196
>At4g21670.1 68417.m03139 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 981
Score = 29.1 bits (62), Expect = 3.5
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Frame = +2
Query: 380 SGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSA 559
SG G + P + D TE I SA D PV+ P + S+
Sbjct: 464 SGLNGNKDPLSFDGMAD---TEVERRLKEAISASSAVLPAANIDPRIAAPVQFPMASASS 520
Query: 560 VTLIPKIAVNITSVSRALPASTVA-PSEPFSRSETPTALVTAKTP 691
V+ + V + V +A+ S +A PS PF + + PT++ P
Sbjct: 521 VS----VPVPVQVVQQAIQPSAMAFPSIPFQQPQQPTSIAKHLVP 561
>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 932
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -3
Query: 367 CFHQGRCRTVSNSEEWRLGAQAVSSLRTQRCEGSRSSRSSIWNLWRR--KRDRCRRFSVR 194
C G ++S +R G + +++ CEGS SS SS W R K+++ R V
Sbjct: 31 CKFHGTSSSIS-LRSYRFGFSFMKNVKRLSCEGSSSSSSSRNENWNRTQKQNQFRPSKVV 89
Query: 193 LHR 185
L+R
Sbjct: 90 LNR 92
>At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ
boundaries domain protein 11 (LBD11) identical to
SP|Q9SK08 LOB domain protein 11 {Arabidopsis thaliana}
Length = 229
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = +2
Query: 344 TASSLMKTSATF------SGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSA 487
TAS++ K + T S T+ PP+ P P SP +AC ++R R A
Sbjct: 11 TASAVAKVTETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCA 64
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 28.3 bits (60), Expect = 6.1
Identities = 24/93 (25%), Positives = 35/93 (37%)
Frame = +2
Query: 413 ISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNI 592
+S P LP P+S +T+ T +A PPV P + + +
Sbjct: 1 MSLVPPLPILSPPSSNSSTTAPPPLQTQP--TTPSAPPPVTPPPSPPQSPPPVVSSSPPP 58
Query: 593 TSVSRALPASTVAPSEPFSRSETPTALVTAKTP 691
VS P+S+ PS P S PT + P
Sbjct: 59 PVVSSPPPSSSPPPSPPVITSPPPTVASSPPPP 91
>At1g46696.1 68414.m05216 hypothetical protein slight similarity to
maebl (GI:20087019)[Plasmodium falciparum].
Length = 616
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 605 RALPASTVAPSEPFSRSETPTALVTAKTPXT 697
R+L + PS+ SR ETPT++ K P T
Sbjct: 211 RSLEKTKYQPSDSGSRPETPTSVSAGKKPET 241
>At1g11660.1 68414.m01339 heat shock protein, putative strong
similarity to gb|Z70314 heat-shock protein from
Arabidopsis thaliana and is a member of the PF|00012
Hsp70 protein family
Length = 773
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -1
Query: 459 ADAGLSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQSRTVRSGDWGLKLCPLSALN 280
AD+GLS+ L+ G +PA+ + ++ +F RE RTV + + + C L
Sbjct: 324 ADSGLSLDQIHSVELVGSGSRIPAISKMLSSLFKRE---LGRTVNASECVARGCALQCAM 380
Query: 279 VVKVVAV 259
+ V V
Sbjct: 381 LSPVFRV 387
>At5g41860.1 68418.m05097 expressed protein
Length = 192
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 506 TDSAAQPPVRS--PTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSR 652
T S+A+P S P+L+ S +P VN ++R P + + PF R
Sbjct: 61 TTSSAEPDPDSTNPSLSESDEVTVPVNFVNFHPINRHFPRRPLTTTAPFKR 111
>At5g01500.1 68418.m00064 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 415
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = -1
Query: 447 LSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQSRTVRSGDWGLKLCPLSALNVVKV 268
LS+V K A AG F+ A A + + +Q+ VR+G K A+ ++
Sbjct: 109 LSIVPKDAALFFAGAFAGAAAKSVTAPLDRIKLLMQTHGVRAGQQSAK----KAIGFIEA 164
Query: 267 VAVLGQVFGICG 232
+ ++G+ GI G
Sbjct: 165 ITLIGKEEGIKG 176
>At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP1
isozyme 5 (TOPP5) / phosphoprotein phosphatase 1
identical to SP|P48485 Serine/threonine protein
phosphatase PP1 isozyme 5 (EC 3.1.3.16) {Arabidopsis
thaliana}, phosphoprotein phosphatase 1 GI:166803
{Arabidopsis thaliana}
Length = 312
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 334 SRLYGIFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWADQVPECKN-EEVANG 510
+R+YG + DE K W + C P A E +CM PE N E++ N
Sbjct: 137 NRIYGFY-DECKRRFNVKLWKVFTDTFNCLPVAAVIDEKILCMHGGLSPELINVEQIKN- 194
Query: 511 FGCPAPGEVSNAG 549
P +V +AG
Sbjct: 195 --IERPTDVPDAG 205
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 515 AAQPPVR--SPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKT 688
+A PP R SP +A T P++A RA T++P P R+E P +L + K
Sbjct: 89 SASPPPRPASPRVASPRPTS-PRVASPRVPSPRAEVPRTLSPKPPSPRAEVPRSL-SPKP 146
Query: 689 PXTXPD 706
P D
Sbjct: 147 PSPRAD 152
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 515 AAQPPVR--SPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKT 688
+A PP R SP +A T P++A RA T++P P R+E P +L + K
Sbjct: 88 SASPPPRPASPRVASPRPTS-PRVASPRVPSPRAEVPRTLSPKPPSPRAEVPRSL-SPKP 145
Query: 689 PXTXPD 706
P D
Sbjct: 146 PSPRAD 151
>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 657
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
Frame = +1
Query: 172 WKCDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVECGERTQLEPPISTPH-CSRLYG 348
W CD CG L D D Y C + + C ++ PH S
Sbjct: 234 WPCD-------VCGFLLNKDTDDLVYACLPCSLMVHRSCIYLPRVIKITRHPHRLSLTSS 286
Query: 349 IFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWAD 471
+ P + C + + + +Y C G Y S+ W D
Sbjct: 287 LQPGDFSCGLCRHTVDVNCGQYSCDKGCQYAIHSKCATWRD 327
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,446,653
Number of Sequences: 28952
Number of extensions: 350693
Number of successful extensions: 1091
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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