Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0170
         (795 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IRB0 Cluster: CG32244-PB, isoform B; n=3; Sophophora|...    69   2e-10
UniRef50_A4M9I6 Cluster: Glycoside hydrolase, family 57; n=6; Th...    34   3.6  
UniRef50_Q62IT6 Cluster: Exodeoxyribonuclease V, alpha subunit; ...    33   8.3  
UniRef50_A7H7W7 Cluster: 6-phosphogluconolactonase; n=1; Anaerom...    33   8.3  

>UniRef50_Q8IRB0 Cluster: CG32244-PB, isoform B; n=3;
           Sophophora|Rep: CG32244-PB, isoform B - Drosophila
           melanogaster (Fruit fly)
          Length = 454

 Score = 68.5 bits (160), Expect = 2e-10
 Identities = 36/92 (39%), Positives = 59/92 (64%)
 Frame = +1

Query: 319 KERMAKDAVLRAFDKKDQLEKFAQILPIIRAMSGTQRVALASLVADQVAAPPGHVPINLS 498
           +ER+ ++A+ +A   +   +KFA++LPI+R +S  QR+AL++L++ Q+ A  GH  +   
Sbjct: 93  RERVLRNALAKALADEGLRQKFAEVLPILRMLSSQQRLALSALISAQMNAKKGH-ELKFE 151

Query: 499 QVRSMFGRTNTTTDLMLPILLHTANLIRRAIR 594
           QVR MFG       L+LPI+   ANLI+ + R
Sbjct: 152 QVRMMFGNEK---KLLLPIVFDIANLIKSSTR 180


>UniRef50_A4M9I6 Cluster: Glycoside hydrolase, family 57; n=6;
           Thermotogales|Rep: Glycoside hydrolase, family 57 -
           Petrotoga mobilis SJ95
          Length = 538

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
 Frame = +1

Query: 196 NSHRPQYNLESFENYSSEN-FFE--TSTQRPLVKNYKSAAKIRAKERMA---KDAVLRAF 357
           ++H P  +   FEN+  E  FFE  T T  PL+K +KS  K +   ++       ++  F
Sbjct: 13  HAHLPYIHHPDFENFMEERWFFEALTETYIPLIKVFKSLEKDKIPFKLTISLSPTLMEMF 72

Query: 358 DKKDQLEKFAQIL 396
           + KD  EK+ + L
Sbjct: 73  NLKDLREKYHKYL 85


>UniRef50_Q62IT6 Cluster: Exodeoxyribonuclease V, alpha subunit;
           n=18; Burkholderia|Rep: Exodeoxyribonuclease V, alpha
           subunit - Burkholderia mallei (Pseudomonas mallei)
          Length = 898

 Score = 33.1 bits (72), Expect = 8.3
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -2

Query: 626 DSXTXLVSLPGLIARRIRLAVXSRIGSIRSVVVFVLPNMDLTCERLMGTCPGG 468
           D    L +  G  A+R++ A+ +R GS+ + +   LP    T  RL+G  PGG
Sbjct: 215 DLRIALAAPTGKAAQRMQEALHARAGSLPAELAARLPRTSCTLHRLLGGGPGG 267


>UniRef50_A7H7W7 Cluster: 6-phosphogluconolactonase; n=1;
           Anaeromyxobacter sp. Fw109-5|Rep:
           6-phosphogluconolactonase - Anaeromyxobacter sp. Fw109-5
          Length = 229

 Score = 33.1 bits (72), Expect = 8.3
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 454 DQVAAPPGHVPINLSQVR-SMFGRTNTTTDLMLPILLHTANLIRRAIRPGKETRXVXLSH 630
           D+  APPGH   NL+ VR S+ G         +P+    A+L   A R  +E R V  S 
Sbjct: 67  DERIAPPGHEDRNLTLVRESLIGPAQLARVHAMPV--EAADLASAAARYAEELRSVAGSP 124

Query: 631 PQI 639
           PQ+
Sbjct: 125 PQL 127


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 744,700,967
Number of Sequences: 1657284
Number of extensions: 14526938
Number of successful extensions: 37096
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37077
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67908372675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)