Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0170
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    26   5.4  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    26   5.4  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    26   7.1  

>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +1

Query: 571 NLIRRAIRPGKETRXVXLSHPQILXRSFSEDTLDEPFDIRVE 696
           + IRR  R GK+   + +  P  +   ++EDT+ +P D++++
Sbjct: 49  SFIRRVERLGKKYGAIKVVRPSSVLNPWNEDTM-KPSDVKMD 89


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 474 WTRAHQSLTGEIHVRKNEYHHRSDAADSTXHCQPYP 581
           WT +  +L+  +HV + E H  S   D   H  P P
Sbjct: 81  WTGSTNNLSHSVHVLRKEGHKCSKEFDPFLHGIPIP 116


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 367 PSYQTLSIPHPSPFF 323
           P YQ L I  PSPFF
Sbjct: 326 PPYQNLKITFPSPFF 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,283
Number of Sequences: 5004
Number of extensions: 58105
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)