Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0170
         (795 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46207| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.62 
SB_49135| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_58403| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_45235| Best HMM Match : CBM_20 (HMM E-Value=0.91)                   28   7.6  

>SB_46207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +1

Query: 217 NLESFENYSSENFFE--TSTQRPLVKNYKSAAKIRAKERMAKDAVLRAFDKKDQLEKF 384
           N E+F N S   + E  TS  R L+K+++   + R  E + K + L   +K D++ ++
Sbjct: 81  NEEAFANASPAKYREKETSASRELIKHFRRRCRTRIDESIRKQSRLFPIEKDDRVSRW 138


>SB_49135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +1

Query: 274 RPLVKNYKSAAKIRAKERMAKDAVLRAF-DKKDQLEKFAQILPIIRAMSGTQRVALASLV 450
           RP  K  +S   + A E+     V+    D  D+LEKF Q+   +   +G   V L   V
Sbjct: 538 RPFTK-VESIQMVTATEQRGVHLVVPVGKDDTDRLEKFLQMYQRVCLQTGENVVLLTVFV 596

Query: 451 ADQVAAPPGHVPINLSQVRSMFGR 522
             + +   GH P   ++ +++  R
Sbjct: 597 NVRGSGEDGHAPEKFAEEKALIAR 620


>SB_58403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 196 NSHRPQYNLESFENYSSENFFETSTQRPLVKNYKSA 303
           N HR +    S E+YSS N  +    +P V+ YKS+
Sbjct: 63  NCHRTKNMDTSEEDYSSINMAQRFLSKPAVRQYKSS 98


>SB_45235| Best HMM Match : CBM_20 (HMM E-Value=0.91)
          Length = 817

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +1

Query: 322 ERMAKDAVLRAFDKKDQLEKFAQILPIIRAMSGTQRVALASLVADQVAAPPGHVPIN 492
           E   K+  L+A +K    + F QI    +A SG   V    +V   +  PPG+VP N
Sbjct: 158 ESSQKEDGLKAPEKHLSKKSFVQIH---QATSGCATVGSVVVVGRDIKTPPGYVPEN 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,250,753
Number of Sequences: 59808
Number of extensions: 458574
Number of successful extensions: 1203
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)