Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0170
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82054-3|CAB04841.2|  269|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U64856-3|AAB04987.1|  392|Caenorhabditis elegans Hypothetical pr...    28   8.9  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z82054-3|CAB04841.2|  269|Caenorhabditis elegans Hypothetical
           protein T26F2.2 protein.
          Length = 269

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 466 APPGHVPINLSQVRSMFGRTNTTTDLML 549
           A PG +P  L+++RS +G+ +   DLML
Sbjct: 21  AEPGGLPNQLNELRSFYGKLDEPLDLML 48


>U64856-3|AAB04987.1|  392|Caenorhabditis elegans Hypothetical
           protein T25F10.4 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +1

Query: 556 LLHTANLIRRAIRPGKETRXVXLSHPQILXRSFSEDTLDEPFDIRVETSTLEXTXARNR 732
           L  TA LI+     G+    V   HP+ L  +  + +L+  F+I  E  T      RNR
Sbjct: 8   LATTAILIKSENSTGRTDILVIAEHPKFLSLNEEKSSLEISFEICFEWETKRGKEPRNR 66


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical protein
            C16A3.7 protein.
          Length = 1119

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
 Frame = +1

Query: 352  AFDKKDQLEKFAQILPIIRAMSGTQRVALASLVADQVAAP-PGHVPINLSQVRSMFGRTN 528
            A +  D   K + +L  +R  S    V ++ LV  + A   PG   I    +     +  
Sbjct: 919  ASESVDSPPKRSIVLTAVRGKSHQPLVLISDLVNYKGALKTPGPAVIRKDIMDQALSKKE 978

Query: 529  TTTDLMLPILLHTANLIRRAIRPGKE 606
             T  LM P+      ++RR  RP KE
Sbjct: 979  ETEGLMKPLRCTEKMVVRREARPMKE 1004


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,071,694
Number of Sequences: 27780
Number of extensions: 340666
Number of successful extensions: 880
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)