Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0170
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.3  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   7.5  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   10.0 

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 260 SKKFSEL*FSNDSKLYCGR*ELVXPV-GFCILTGAGVWYWDYLCY 129
           S  F E+    D  ++  + E +  V G  I  G  +W + YLCY
Sbjct: 7   SSAFKEIKTLPDRGMWSSKIEFILSVVGLAIGLG-NLWRFPYLCY 50


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 260 SKKFSEL*FSNDSKLYCGR*ELVXPV-GFCILTGAGVWYWDYLCY 129
           S  F E+    D  ++  + E +  V G  I  G  +W + YLCY
Sbjct: 60  SSAFKEIKTLPDRGMWSSKIEFILSVVGLAIGLG-NLWRFPYLCY 103


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 217 NLESFENYSSENFFETSTQRPLVKNYKSAAKIRAKERMAKDAVLRAFDKKD-QLEK 381
           N+E  EN S +    +++ R     ++  +   ++ER       R + KKD Q EK
Sbjct: 188 NIEKSENESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREYRKKDRQYEK 243


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 510 HVRKNEYHHRSDAADSTXHCQPYPASNQTGQGNQ 611
           H  +N +HH    A    H +PY    Q  Q  Q
Sbjct: 142 HHLQNHHHHLQSTAVQDHH-RPYQQQQQQQQRQQ 174


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 680 NGSSSVSSEKDRXRIW 633
           +G   +SS+KDR  +W
Sbjct: 360 SGMKIISSKKDRQELW 375


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 438 CLASGRPGRRTPWTRAHQSLTGEI 509
           C A G P     W RA  S  G++
Sbjct: 25  CQARGNPQPDIIWVRADGSAVGDV 48


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 161 AGVWYWDYLCY 129
           A VW + YLCY
Sbjct: 2   ANVWRFPYLCY 12


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 513 VRKNEYHHRSDAADSTXHCQPYPASNQT 596
           V +N ++H+S   D + +   YP  NQT
Sbjct: 355 VGENLHNHQSFGMDFSLNEDFYPTFNQT 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,131
Number of Sequences: 438
Number of extensions: 4115
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)