Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0170
         (795 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22520.1 68415.m02671 hypothetical protein  and grail               29   2.7  
At4g18890.1 68417.m02785 brassinosteroid signalling positive reg...    29   4.7  
At3g09020.1 68416.m01057 alpha 1,4-glycosyltransferase family pr...    28   6.2  

>At2g22520.1 68415.m02671 hypothetical protein  and grail
          Length = 185

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +1

Query: 259 ETSTQRPLVKNYK-SAAKIRAKERMAKDAVLRAFDKKDQLEKFAQILPIIRAMSGTQRVA 435
           +   Q  L+K+ K S +K   +E + K + L     K Q EK A+    I+ +   +R  
Sbjct: 102 KADVQETLLKSSKPSQSKADVQETLLKPSKLSQSKAKVQ-EKSAKATSTIKTLQIQEREL 160

Query: 436 LASLVADQVAAPPGHVPI 489
            +  V    A  P HVPI
Sbjct: 161 FSGSVTMDAAPSPRHVPI 178


>At4g18890.1 68417.m02785 brassinosteroid signalling positive
           regulator-related contains similarity to BZR1 protein
           [Arabidopsis thaliana] gi|20270971|gb|AAM18490
          Length = 284

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 451 PLARQVPRVAFQTSP**WAGSVRTSPTGPSYQTLSIPHPSPFF 323
           PLAR   R         W   ++T  +GPS  T S+   +PFF
Sbjct: 155 PLARSPTRDQVTIPDSGWLSGMQTPQSGPSSPTFSLVSRNPFF 197


>At3g09020.1 68416.m01057 alpha 1,4-glycosyltransferase family
           protein / glycosyltransferase sugar-binding DXD
           motif-containing protein low similarity to
           alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens
           [gi:5726306], Gb3 synthase, Rattus norvegicus
           [gi:9082162] ; contains Pfam profiles PF04572: Alpha
           1,4-glycosyltransferase conserved region, PF04488:
           Glycosyltransferase sugar-binding region containing DXD
           motif
          Length = 411

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +1

Query: 289 NYKSAAKIRAKERMAKDAVLRAFDKKDQLEKFAQ 390
           NY    +I  KE + K  VL  F  KD  EKF Q
Sbjct: 84  NYSIKQQITVKEEINKLQVLEVFGGKDVSEKFQQ 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,134,812
Number of Sequences: 28952
Number of extensions: 321602
Number of successful extensions: 794
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)