Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0168
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    30   0.32 
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    30   0.42 
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    27   2.2  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   5.2  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    26   6.9  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 21/62 (33%), Positives = 36/62 (58%)
 Frame = -2

Query: 474 EARISSAKSCHGTSDGVKTFLPGMSLAV*NPTTXWSFNASDSSKLSISPRHTSDNTKATW 295
           +++ SS+KS H +S G+++     S+A+ NPT+  S  +S SS  S     + D+TK   
Sbjct: 325 KSKHSSSKSSHDSSQGLEST---SSIAL-NPTSSISSTSSSSSTSSAISTISQDHTKTVT 380

Query: 294 TV 289
           +V
Sbjct: 381 SV 382


>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 209 EPVPKLEALTQCSGEVKYACDVYTGPRTVHVAFV 310
           E +PKL A     G++KY CDVY G  +   AF+
Sbjct: 302 EEMPKLIA----EGKIKYKCDVYDGLESAPEAFI 331


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 269 DVYTGPRTVHVAFVLSD-VCLGEIESFDESEALKLQXVVGFYTAKDI 406
           D+  GP   ++   L+  +CL +I++ DE    KL   VGF+  K I
Sbjct: 63  DIVLGPTMRNLKEKLAGGLCLEDIQNIDEVSLNKLIEKVGFHNRKTI 109


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 496 SVVRDFLRSQDLFGKVLPRHV*RCEDVL 413
           S V DF+ + D FG+V P+H     D+L
Sbjct: 593 SEVYDFVEAADGFGEVFPQHKYAVVDIL 620


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 679 PLLVALIXTSCRTXLLFISSYQCFLNRQHRXR 584
           P++   I + CR   ++I+ +  F++  HR R
Sbjct: 246 PVVTDTIISRCRRCRMYINPFSIFIDNGHRYR 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,919,796
Number of Sequences: 5004
Number of extensions: 56419
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)