Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0168
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934... 77 1e-14
07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350... 61 8e-10
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234... 56 2e-08
03_06_0252 - 32656068-32656276,32656361-32656550,32656682-326567... 55 5e-08
03_06_0253 - 32666152-32666360,32666443-32666632,32666764-326668... 55 7e-08
07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919... 51 1e-06
07_01_1146 + 10756897-10757065,10763869-10765521,10765638-107659... 50 2e-06
05_06_0042 - 25131962-25132149,25132261-25132345,25132750-251327... 29 4.1
01_01_0620 - 4621291-4621379,4621722-4621803,4622238-4622282,462... 29 5.4
12_01_0174 - 1301339-1301743,1301850-1302287 28 7.2
09_02_0439 + 9406451-9407178,9407225-9407603,9407887-9408038,940... 28 7.2
07_03_1089 - 23879483-23881909 28 7.2
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631... 28 7.2
05_05_0351 - 24319356-24319385,24319470-24320902,24321011-243211... 28 9.5
05_02_0028 - 5764980-5766374 28 9.5
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 28 9.5
>03_04_0157 + 17791540-17791681,17792809-17792908,17793386-17793477,
17793562-17793620,17794135-17795637,17796478-17796720,
17796831-17797145,17797571-17797573,17798399-17798638,
17798975-17799259,17799335-17799556,17800105-17800266,
17800411-17800545,17802452-17802688,17802787-17802960,
17803692-17803934
Length = 1384
Score = 77.4 bits (182), Expect = 1e-14
Identities = 51/138 (36%), Positives = 69/138 (50%)
Frame = +2
Query: 209 EPVPKLEALTQCSGEVKYACDVYTGPRTVHVAFVLSDVCLGEIESFDESEALKLQXVVGF 388
+PV A+ Q +GE +Y D T P T+H A VLS I S D S A G
Sbjct: 622 QPVVHTSAMLQVTGEAEYTDDTPTPPNTLHAALVLSTKAHARILSIDASLAKSSPGFAGL 681
Query: 389 YTAKDIPGKNVFTPSDVPWQDFAEEILASKKISYYGQPVALIAATTHRLAVTAANLVHVK 568
+ +KD+PG N P EE+ AS ++ GQ V L+ A T A AAN V+++
Sbjct: 682 FLSKDVPGANHTGP-----VIHDEEVFASDVVTCVGQIVGLVVADTRDNAKAAANKVNIE 736
Query: 569 YKKSNAXPVLSIQEALVA 622
Y S +LSI+EA+ A
Sbjct: 737 Y--SELPAILSIEEAVKA 752
>07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,
3505561-3505653,3505926-3506891,3507267-3507485,
3508038-3508247,3508371-3508630,3508956-3510737,
3510796-3511009
Length = 1414
Score = 61.3 bits (142), Expect = 8e-10
Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Frame = +2
Query: 212 PVPKLEALTQCSGEVKYACDVYTGPRTVHVAFVLSDVCLGEIESFDESEALKLQXVVGFY 391
P K+ A Q SGE Y D+ + +H AFV S L ++S + + +L+ V
Sbjct: 654 PAKKVGAELQASGEAIYVDDIPSPKDCLHGAFVYSTKPLAHVKSIELNPSLEQLKTVAIV 713
Query: 392 TAKDIP--GKNVFTPSDVPWQDFAEEILASKKISYYGQPVALIAATTHRLAVTAANLVHV 565
TAKDIP G NV + E + + G+P+ ++ A T + A AA+ V
Sbjct: 714 TAKDIPKGGSNVGANTIFG----PEPLFGDPLTQWAGEPLGIVVAETQKTANIAASRALV 769
Query: 566 KYKKSNA-XPVLSIQEAL 616
Y N P+LSI+EA+
Sbjct: 770 DYSMENLDAPILSIEEAV 787
>10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,
2343027-2343236,2343436-2343654,2344038-2345000,
2345279-2345374,2345482-2345580,2345953-2346142,
2346594-2346823
Length = 1358
Score = 56.4 bits (130), Expect = 2e-08
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 1/142 (0%)
Frame = +2
Query: 194 YGRLTEPVPKLEALTQCSGEVKYACDVYTGPRTVHVAFVLSDVCLGEIESFDESEALKLQ 373
Y + +P+ K+ A Q SGE Y D+ ++ AF+ S I+ + +L Q
Sbjct: 585 YKPVGKPIKKVGAELQASGEAVYVDDIPAPKDCLYGAFIYSTHPHAHIKGVNFRSSLASQ 644
Query: 374 XVVGFYTAKDIPGKNVFTPSDVPWQDFAEEILASKKISYYGQPVALIAATTHRLAVTAAN 553
V+ TAKDIP S P E + A + GQ + ++ A T + A AA
Sbjct: 645 KVITVITAKDIPTGGENVGSCFPMLG-DEALFADPVAEFAGQNIGVVIAETQKYAYMAAR 703
Query: 554 LVHVKYKKSN-AXPVLSIQEAL 616
++Y N P+L++++A+
Sbjct: 704 QAVIEYNTENLQPPILTVEDAV 725
>03_06_0252 - 32656068-32656276,32656361-32656550,32656682-32656780,
32656917-32657012,32657200-32658153,32658476-32658694,
32658911-32659120,32659241-32659503,32659605-32661281,
32663639-32663792
Length = 1356
Score = 55.2 bits (127), Expect = 5e-08
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 4/145 (2%)
Frame = +2
Query: 194 YGRLTEPVPKLEALTQCSGEVKYACDVYTGPRTVHVAFVLSDVCLGEIESFDESEALKLQ 373
Y + +P+ K A Q SGE Y D+ ++ AF+ S I+ + +L Q
Sbjct: 593 YRPIGKPIEKTGAELQASGEAVYVDDISAPKDCLYGAFIYSTHPHAHIKGVNFRSSLASQ 652
Query: 374 XVVGFYTAKDIP--GKNVFTPSDVPWQDFAEEILASKKIS-YYGQPVALIAATTHRLAVT 544
V+ T KDIP GKN+ + S + +E L +S + GQ + ++ A T + A
Sbjct: 653 KVITVITLKDIPTNGKNIGSCSPM----LGDEALFVDPVSEFAGQNIGVVIAETQKYAYM 708
Query: 545 AANLVHVKYKKSN-AXPVLSIQEAL 616
AA ++Y N P+L++++A+
Sbjct: 709 AAKQSVIEYSTENLQPPILTVEDAV 733
>03_06_0253 - 32666152-32666360,32666443-32666632,32666764-32666862,
32666999-32667094,32667408-32668361,32668683-32668901,
32669282-32669491,32669617-32669879,32670041-32671717,
32672702-32672852
Length = 1355
Score = 54.8 bits (126), Expect = 7e-08
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Frame = +2
Query: 194 YGRLTEPVPKLEALTQCSGEVKYACDVYTGPRTVHVAFVLSDVCLGEIESFDESEALKLQ 373
Y + +P+ K A Q SGE Y D+ ++ AF+ S I+ + +L Q
Sbjct: 592 YKPVGKPIEKTGAELQASGEAVYVDDIPAPKDCLYGAFIYSTHPHAHIKDINFRSSLASQ 651
Query: 374 XVVGFYTAKDIPGKNVFTPSDVPWQDFAEEILASKKIS-YYGQPVALIAATTHRLAVTAA 550
V+ TAKDIP S P +E L +S + GQ + ++ A T + A AA
Sbjct: 652 KVITVITAKDIPTGGENIGSCFPM--LGDEALFVHPVSEFAGQNIGVVIAETQKYAYMAA 709
Query: 551 NLVHVKYKKSN-AXPVLSIQEAL 616
++Y N P+L+I++A+
Sbjct: 710 KQAVIEYSTENLQPPILTIEDAV 732
>07_01_1149 +
10789733-10791209,10791326-10791588,10791745-10791954,
10792398-10792475,10792505-10792705,10792768-10792908,
10794749-10795714,10797824-10797919,10798450-10798638,
10798849-10798956
Length = 1242
Score = 50.8 bits (116), Expect = 1e-06
Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 3/144 (2%)
Frame = +2
Query: 194 YGRLTEPVPKLEALTQCSGEVKYACDVYTGPRTVHVAFVLSDVCLGEIESFDESEALKLQ 373
Y + +P+ K + Q SGE Y D+ ++ F+ S L ++S +L +
Sbjct: 475 YTPVGDPIKKYKVEVQASGEAIYVDDIPAPKNCLYGEFIYSTQPLANVKSIKFKPSLASK 534
Query: 374 XVVGFYTAKDIP--GKNVFTPSDVPWQDFAEEILASKKISYYGQPVALIAATTHRLAVTA 547
++ +AKDIP G+N+ W E + + GQ + ++ A T A A
Sbjct: 535 KIITVVSAKDIPTGGRNI---GSTFWFGDEEPLFGDPIAEFAGQVLGVVIAETQPYADMA 591
Query: 548 ANLVHVKYKKSN-AXPVLSIQEAL 616
A V+Y P+L++++A+
Sbjct: 592 AKQAVVEYTTDGLKAPILTVEQAV 615
>07_01_1146 + 10756897-10757065,10763869-10765521,10765638-10765900,
10766057-10766266,10766818-10767036,10767379-10768344,
10768575-10768670,10768772-10768870,10769349-10769538,
10769623-10769855
Length = 1365
Score = 50.0 bits (114), Expect = 2e-06
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 3/144 (2%)
Frame = +2
Query: 194 YGRLTEPVPKLEALTQCSGEVKYACDVYTGPRTVHVAFVLSDVCLGEIESFDESEALKLQ 373
Y + +P+ K + Q SGE Y D+ ++ F+ S L ++S +L +
Sbjct: 590 YKPVGDPIKKYKVELQASGEAIYVDDIPAPKNCLYGEFIYSTQPLANVKSIKFKPSLASK 649
Query: 374 XVVGFYTAKDIP--GKNVFTPSDVPWQDFAEEILASKKISYYGQPVALIAATTHRLAVTA 547
++ +AKDIP G+N+ S + D E + + GQ + ++ A T R A A
Sbjct: 650 KILTVVSAKDIPTGGRNI--GSTFLFGD-EEPLFGDPIAEFAGQALGVVIAETQRYADMA 706
Query: 548 ANLVHVKYKKSN-AXPVLSIQEAL 616
A V+Y P+L++++A+
Sbjct: 707 AKQAVVEYTTDGLKAPILTVEQAV 730
>05_06_0042 -
25131962-25132149,25132261-25132345,25132750-25132797,
25133084-25133197,25133279-25133410,25134029-25134124,
25134771-25135005,25135054-25135322,25135408-25135491,
25136529-25136703,25138018-25138229
Length = 545
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 227 PVSALVPLSGHKDLSVSNVCSPLDTSRF 144
P + L+ SGH LS +C PLD+S F
Sbjct: 251 PDNLLLDRSGHLKLSDFGLCKPLDSSNF 278
>01_01_0620 -
4621291-4621379,4621722-4621803,4622238-4622282,
4623701-4623892,4625224-4625337,4625430-4625561,
4626356-4626440,4626526-4626605,4626791-4627034,
4627376-4627617,4628232-4628315,4628427-4628601,
4629351-4629464,4630025-4630236
Length = 629
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 227 PVSALVPLSGHKDLSVSNVCSPLDTSRFSVVPPDAYRG 114
P + L+ +GH LS +C P+D S+ S + D G
Sbjct: 280 PDNLLLDKNGHMKLSDFGLCKPIDCSKLSTLNEDEPMG 317
>12_01_0174 - 1301339-1301743,1301850-1302287
Length = 280
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = -2
Query: 600 DNTGXALDFLYFT*TKLAAVTASLCVVAAMRATGCP**EIFFEA----RISSAKSCHGTS 433
+ AL+F+Y T +LAA T LC+ AT F R+ +A G
Sbjct: 182 EEVAAALNFIYRTQKELAACTDDLCLTMDGSATSYQLLGNFAAGQKLYRLETATGADGDG 241
Query: 432 DGVKTFL 412
DGV T +
Sbjct: 242 DGVPTII 248
>09_02_0439 +
9406451-9407178,9407225-9407603,9407887-9408038,
9408432-9408504,9409255-9409275
Length = 450
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 173 VCSPLDTSRFS-VVPPDAYRGFTAGANE 93
VC PL T R+ VVPP A RGF G E
Sbjct: 138 VCEPL-TRRYQWVVPPSAGRGFGGGGCE 164
>07_03_1089 - 23879483-23881909
Length = 808
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 506 ALIAAT--THRLAVTAANLVHVKYKKSNAXPVLSIQEALVA 622
ALI+A H LA +H KS A VLS+ AL+A
Sbjct: 168 ALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIA 208
>03_06_0500 -
34361139-34362006,34362295-34362818,34362908-34363125,
34363259-34363406
Length = 585
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 464 ILASKKISYYGQPVALIAATTHRLAVTAANLVHVKYKKSNAXPVLSIQEALVAADKEQ 637
+ +K+ + V L A LAV A H +Y+ P+ + LVAA +++
Sbjct: 209 VYLQEKVGWGAAAVVLAAVMAASLAVFLAGWRHYRYRVPEGSPLTPLVRVLVAAARKR 266
>05_05_0351 -
24319356-24319385,24319470-24320902,24321011-24321180,
24321302-24321485,24323094-24323264,24324002-24324125
Length = 703
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 179 KQINLYGRLTEPVPKLEALTQCSGEVKYACDVYTGPR 289
K+++ YG TE +P + S V Y+ + YTG R
Sbjct: 384 KKLSAYGGATENLPHKHQEEKSSSHVSYSLNSYTGFR 420
>05_02_0028 - 5764980-5766374
Length = 464
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +3
Query: 342 ASTNPRR*NSXAWSG--STPPKTYPARTSSHRQTCRGKTLPKRSWLR 476
A NP + SG S + P S R+ R TLP+RSW R
Sbjct: 9 ARVNPTAVSGGGLSGLYSRASSSPPLHHSGSRRRLRTNTLPRRSWRR 55
>03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 49 CRKHLXLGLFYKAILSLAPAVNPRYASGGT 138
CR H +YK +LSLA N R +S G+
Sbjct: 1435 CRLHQLFSTYYKILLSLAVQQNARSSSLGS 1464
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,780,393
Number of Sequences: 37544
Number of extensions: 448170
Number of successful extensions: 1296
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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