Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0168
(772 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_68| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 2e-14
SB_30599| Best HMM Match : Ald_Xan_dh_C (HMM E-Value=7.7e-35) 77 2e-14
SB_27644| Best HMM Match : Ald_Xan_dh_C (HMM E-Value=3.1e-26) 49 4e-06
SB_53911| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=0) 44 1e-04
SB_21836| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.063
SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 33 0.19
SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_22701| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_47334| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_31957| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_42248| Best HMM Match : Keratin_B2 (HMM E-Value=4.4) 28 9.6
>SB_68| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 433
Score = 77.0 bits (181), Expect = 2e-14
Identities = 53/140 (37%), Positives = 75/140 (53%)
Frame = +2
Query: 203 LTEPVPKLEALTQCSGEVKYACDVYTGPRTVHVAFVLSDVCLGEIESFDESEALKLQXVV 382
LT+P+ KL A Q SGE +Y D+ ++ AFVL+ +I S D + A L VV
Sbjct: 239 LTKPMTKLSAKLQASGEAQYTNDIPAQNGELYAAFVLASQGNCKIASIDATIAKALPGVV 298
Query: 383 GFYTAKDIPGKNVFTPSDVPWQDFAEEILASKKISYYGQPVALIAATTHRLAVTAANLVH 562
F +A IP + V + +P + EEI S ++ + GQ + LI A + R A AA V
Sbjct: 299 EFMSASSIPQQGV--NNFMPTPNDPEEIFCSGEVLFAGQAIGLILADSQRHADKAAEAVK 356
Query: 563 VKYKKSNAXPVLSIQEALVA 622
V Y K A P+LSI+ A+ A
Sbjct: 357 VVY-KDIATPILSIKAAIAA 375
>SB_30599| Best HMM Match : Ald_Xan_dh_C (HMM E-Value=7.7e-35)
Length = 255
Score = 77.0 bits (181), Expect = 2e-14
Identities = 53/140 (37%), Positives = 75/140 (53%)
Frame = +2
Query: 203 LTEPVPKLEALTQCSGEVKYACDVYTGPRTVHVAFVLSDVCLGEIESFDESEALKLQXVV 382
LT+P+ KL A Q SGE +Y D+ ++ AFVL+ +I S D + A L VV
Sbjct: 76 LTKPMTKLSAKLQASGEAQYTNDIPAQNGELYAAFVLASQGNCKIASIDATIAKALPGVV 135
Query: 383 GFYTAKDIPGKNVFTPSDVPWQDFAEEILASKKISYYGQPVALIAATTHRLAVTAANLVH 562
F +A IP + V + +P + EEI S ++ + GQ + LI A + R A AA V
Sbjct: 136 EFMSASSIPQQGV--NNFMPTPNDPEEIFCSGEVLFAGQAIGLILADSQRHADKAAEAVK 193
Query: 563 VKYKKSNAXPVLSIQEALVA 622
V Y K A P+LSI+ A+ A
Sbjct: 194 VVY-KDIATPILSIKAAIAA 212
>SB_27644| Best HMM Match : Ald_Xan_dh_C (HMM E-Value=3.1e-26)
Length = 274
Score = 49.2 bits (112), Expect = 4e-06
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Frame = +2
Query: 293 VHVAFVLSDVCLGEIESFDESEALKLQXVVGFYTAKDIPG-KNVFTPSDVPWQDFAEEIL 469
++VA VLSD +I S D S+A+ + V FY+A D+ N F D EE+
Sbjct: 34 LYVARVLSDRPHAKILSVDASKAVAVHGVYAFYSAADLASVDNNFGLLD------KEELF 87
Query: 470 ASKKISYYGQPVALIAATTHRLAVTAANLVHVKYKKSNAXPVLSIQEAL 616
A+ ++ + GQ + ++AA +A +AA LV V Y+ A V +I++A+
Sbjct: 88 ATDEVVFVGQTIGVVAADCKGVADSAAKLVKVTYEDMPA--VFTIEDAI 134
>SB_53911| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=0)
Length = 817
Score = 44.4 bits (100), Expect = 1e-04
Identities = 29/94 (30%), Positives = 50/94 (53%)
Frame = +2
Query: 341 SFDESEALKLQXVVGFYTAKDIPGKNVFTPSDVPWQDFAEEILASKKISYYGQPVALIAA 520
S D SEA+K+ V F +A D+PG N P +P E + + +++ GQ + + A
Sbjct: 58 SIDASEAVKMPGVQAFVSADDVPGCNKSGPV-IP----DELVFYNHEVTSTGQAIGAVVA 112
Query: 521 TTHRLAVTAANLVHVKYKKSNAXPVLSIQEALVA 622
T A AA V ++Y+ + +L+I++A+ A
Sbjct: 113 ETQAQAQRAAKAVKIEYE--DLPRILTIEDAIAA 144
>SB_21836| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 35.1 bits (77), Expect = 0.063
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 203 LTEPVPKLEALTQCSGEVKYACDVYTGPRTVHVAFVLS 316
+++P+PKL + Q SGE +Y D+ +H AFV+S
Sbjct: 127 VSKPIPKLASKLQASGEAQYTDDIPFVDGELHAAFVIS 164
>SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +1
Query: 406 TRQERLHTVRRAVARLCRRDPGFEENLLLRTARRSHSRDDTQTGGHC 546
+RQ L+T R VAR C +D G+E+N + R RR+ D GHC
Sbjct: 357 SRQILLNTTTR-VARFCGQDSGWEDNAVRRYRRRARLAVDC---GHC 399
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 33.5 bits (73), Expect = 0.19
Identities = 25/71 (35%), Positives = 33/71 (46%)
Frame = +1
Query: 307 RVIRRVPWRD*KLRRIRGVETPXRGRVLHRQRHTRQERLHTVRRAVARLCRRDPGFEENL 486
+++RRV KLRR+R R R L R+R+ R+ RL +RR R RR
Sbjct: 343 KILRRVVTVRHKLRRLR-----KRARKLRRRRNRRRRRLRRIRRRRRRRRRRRRKLRRRR 397
Query: 487 LLRTARRSHSR 519
R RR R
Sbjct: 398 RRRPLRRRRRR 408
>SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 629 KEQXGSAGXXNQSDQQRLGYPTRYKGXFLDAVPXPLH--DGKLXPVR 763
+E GS+ S QR+ + + KG + DA+P H DG P R
Sbjct: 198 REAYGSSTTKETSASQRVEFSRKKKGSYTDAIPSSTHDNDGMTSPCR 244
>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6116
Score = 30.7 bits (66), Expect = 1.4
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 3/121 (2%)
Frame = +2
Query: 326 LGEIESFDESEALKLQXVVGFYTAKDIPGKNVFTPSDVPWQDFAEEILASKKISYYGQPV 505
+G + + D Q V YT + P N FT + + F L + + YY V
Sbjct: 5321 IGHVRAIDIDNGTHAQLV---YTIEPSPNSNHFTMNPITGGLFTAMALDRENVPYYRLTV 5377
Query: 506 ALIAATTHRLAVTAANLVHVKYKKSNAXPVL---SIQEALVAADKEQXGSAGXXNQSDQQ 676
+ + + + VH+ N P ++ A +A + E S SD+
Sbjct: 5378 RVTDSAAYPSQLFNTTTVHITVLDLNDNPPAFDKAVFNASIAENSESGASVTRVTASDRD 5437
Query: 677 R 679
R
Sbjct: 5438 R 5438
>SB_22701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 29.9 bits (64), Expect = 2.4
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Frame = +2
Query: 497 QPVALIAATTHRLA------VTAANLVHVKYKKSNAXPVLSIQEALVA-------ADKEQ 637
QPVA++ + +LA + +L + K S++ VL +Q A+ A +EQ
Sbjct: 2 QPVAVLPVLSEQLALDDLWDILGESLTELA-KTSDSHAVLLLQPAVEAFFLVHGSERQEQ 60
Query: 638 XGSAGXXNQSDQQRLGYPTRYKGXFLDAVPXPLHDGKLXPVRSPS 772
+ Q DQQR A P PL G + P R S
Sbjct: 61 AAATASTAQQDQQRASLRLSTSSDLFPASPGPLSPGMMSPNRQTS 105
>SB_47334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 439 AVARLCRRDPGF-EENLLLRTARRSHSRDDTQTGGHCG 549
++ R C RD G+ +++++L + H R + G HCG
Sbjct: 252 SLLRRCSRDQGYVQQSMILLESILKHRRSLKEQGNHCG 289
>SB_31957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 538
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +2
Query: 425 TPSDVPWQDFAEEILASKKISYYGQPVA 508
T S + W+D +++I A ++I Y+ +P+A
Sbjct: 193 TCSVLTWKDISQDIRAEREIKYFDRPMA 220
>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 27.9 bits (59), Expect = 9.6
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
Frame = +2
Query: 473 SKKISYYGQPVALIAATTHRLAVTAA--NLVHVKYKKSNAXPVLSIQEALVAADK-EQXG 643
SK+ QPVA++ + +LA+ L + + P + + +++ EQ
Sbjct: 1766 SKESEPQAQPVAVLPVLSEQLALDDLWDILGESLTELAKTSPAVEAFFLVHGSERQEQAA 1825
Query: 644 SAGXXNQSDQQRLGYPTRYKGXFLDAVPXPLHDGKLXPVRSPS 772
+ Q DQQR A P PL G + P R S
Sbjct: 1826 ATASTAQQDQQRASLRLSTSSDLFPASPGPLSPGMMSPNRQTS 1868
>SB_42248| Best HMM Match : Keratin_B2 (HMM E-Value=4.4)
Length = 736
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 25 LPPEPSPSCRKHLXLGLFYKAILSLA 102
LPP P P CR++ F +A+ + A
Sbjct: 128 LPPPPPPECRRYTVFNSFDRAVANTA 153
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,410,964
Number of Sequences: 59808
Number of extensions: 492987
Number of successful extensions: 1205
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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