Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0168
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    80   1e-15
Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical pr...    73   3e-13
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p...    50   2e-06
AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical ...    31   1.2  
U11280-3|AAM97952.1|  403|Caenorhabditis elegans Hypothetical pr...    28   8.5  
U11280-2|AAK77637.1|  452|Caenorhabditis elegans Hypothetical pr...    28   8.5  
U11280-1|AAA19436.1|  450|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
           protein F15E6.6 protein.
          Length = 1228

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 55/128 (42%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
 Frame = +2

Query: 245 SGEVKYACDVYTGPRTVHVAFVLSDVCLGEIESFDESEALKLQXVVGFYTAKDIPGKNV- 421
           +GE  Y  D+ T    VH+ FVLS V   EI S D +EALKL+ VVGF+ A D+PG N  
Sbjct: 528 TGEALYVNDIQTY-NPVHLGFVLSTVPHAEILSIDATEALKLEGVVGFFGASDVPGNNSP 586

Query: 422 -FTPSDVPWQDFAEEILASKKISYYGQPVALIAATTHRLAVTAANLVHVKYKKSNAXPVL 598
               S++   D A  I A KK+   GQ V +IAA    LA  AA LV ++YK+  A  ++
Sbjct: 587 GLQISNMNLPDDA-TIFADKKVESVGQVVGVIAANDVLLARRAAKLVKLEYKELPA--LV 643

Query: 599 SIQEALVA 622
            +++A+VA
Sbjct: 644 ELKDAIVA 651


>Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical
           protein F55B11.1 protein.
          Length = 1358

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 1/141 (0%)
 Frame = +2

Query: 203 LTEPVPKLEALTQCSGEVKYACDVYTGPRTVHVAFVLSDVCLGEIESFDESEALKLQXVV 382
           L  P+  +      +GE  Y CD        H+AFVLS +  G + S D + AL++  VV
Sbjct: 596 LGRPIKHVSGDKHTTGEAVY-CDDINVADCNHIAFVLSPIAHGTLNSIDYTAALEIDGVV 654

Query: 383 GFYTAKDIP-GKNVFTPSDVPWQDFAEEILASKKISYYGQPVALIAATTHRLAVTAANLV 559
           G   A D+  G  +   SD P       +   + I+++GQP+A I AT H +A  AA+LV
Sbjct: 655 GTIDASDVTTGAQMGHHSDTP-------VFVKETITFHGQPIAAIVATDHEIARKAASLV 707

Query: 560 HVKYKKSNAXPVLSIQEALVA 622
            + Y  S   P+++I++AL A
Sbjct: 708 KLDY--SVEKPIVTIKQALEA 726


>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
           protein B0222.9 protein.
          Length = 1217

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
 Frame = +2

Query: 245 SGEVKYACDVYTGPRTVHVAFVLSDVCLGEIESFDESEALKLQXVVGFYTAKDIPGKNVF 424
           +GE  Y  D+      VH+ FVLS V   EI   D SEAL+L+ V G++   D+PG N  
Sbjct: 530 TGEAFYVNDIQAY-NAVHLGFVLSTVPHAEITKIDVSEALQLEGVAGYFGVSDVPGNN-- 586

Query: 425 TPS-DVPWQDFAEE--ILASKK 481
           TP   +   +F ++  I A KK
Sbjct: 587 TPGLQISNMNFPDDTTIFADKK 608


>AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical
           protein Y66H1B.3 protein.
          Length = 1084

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -2

Query: 357 SDSSKLSISPRHTSDNTKATWTVLGPVYTSHAYFTSPEHCVRASSFGTG 211
           S S     SP+   D+ +    V G V  SH    +PE   +  +FG G
Sbjct: 507 SQSMDFEYSPKQAPDDLEVLVKVAGEVIESHKIHVAPESSSKIRAFGAG 555


>U11280-3|AAM97952.1|  403|Caenorhabditis elegans Hypothetical
           protein T17E9.2c protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +2

Query: 482 ISYYGQPVALIAATTHRLAVTAANLVHVKYKKSNAXPVLSIQEALVAADKEQ 637
           +S+Y  P  ++  TTH+  + AA L +  Y   +  P   I ++L+ A++E+
Sbjct: 305 VSFYSLPSTVMGHTTHK-TIYAAYLYY--YVAGSVTPKQLINDSLILANREK 353


>U11280-2|AAK77637.1|  452|Caenorhabditis elegans Hypothetical
           protein T17E9.2b protein.
          Length = 452

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +2

Query: 482 ISYYGQPVALIAATTHRLAVTAANLVHVKYKKSNAXPVLSIQEALVAADKEQ 637
           +S+Y  P  ++  TTH+  + AA L +  Y   +  P   I ++L+ A++E+
Sbjct: 354 VSFYSLPSTVMGHTTHK-TIYAAYLYY--YVAGSVTPKQLINDSLILANREK 402


>U11280-1|AAA19436.1|  450|Caenorhabditis elegans Hypothetical
           protein T17E9.2a protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +2

Query: 482 ISYYGQPVALIAATTHRLAVTAANLVHVKYKKSNAXPVLSIQEALVAADKEQ 637
           +S+Y  P  ++  TTH+  + AA L +  Y   +  P   I ++L+ A++E+
Sbjct: 352 VSFYSLPSTVMGHTTHK-TIYAAYLYY--YVAGSVTPKQLINDSLILANREK 400


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,588,305
Number of Sequences: 27780
Number of extensions: 336957
Number of successful extensions: 866
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)