Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0166
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    28   1.7  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   2.3  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    27   3.0  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    26   6.9  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    25   9.1  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    25   9.1  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   9.1  

>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 140 PSPSCTGRS*TPPISXGPVAERNTVQLLCSCPPCSHDE 27
           P P    RS   PI+  P+   +T+QL+ SCPP ++ +
Sbjct: 33  PLPLTLSRS--TPIN--PIIRSDTIQLVISCPPVTYSD 66


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 236 LAVFYQTLDTKVPKW 280
           + V+Y+ LDTK+P+W
Sbjct: 834 IIVYYEKLDTKIPQW 848


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +2

Query: 530 VCDVPVDDFNPCTPANQYNYEQAGPCVFLKLNKIYNWXPQPYNNTEDLPTNMPED 694
           VCDV  D  NP  P   YN         +++  +    P    + + LPT +P +
Sbjct: 275 VCDVSCDTTNPNNPIPIYNVNTTFDHPTVEVKGVTTPPPLEVISIDHLPTLLPRE 329


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 215 VGFFAALLAVFYQTLDTKVPKWQLDSSIIG 304
           VGFF ++L   ++  D  V ++    +IIG
Sbjct: 293 VGFFVSVLDALFECFDVPVVQYMYQENIIG 322


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = +2

Query: 518 GEKQVC-DVPVDDFNPCTPA---NQYNYEQAGPCVFL 616
           G K VC DV ++D + C      N Y Y +  PCV +
Sbjct: 195 GTKLVCSDVLLNDDSNCPSKKGINNYQYPRTDPCVIM 231


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 14  DRSPAHRVNMADKNKVAEQYYAPP 85
           D  P HR     K+ ++ QY+ PP
Sbjct: 43  DTRPTHRKGHHHKHSLSHQYFLPP 66


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 453 AAVVKLMVPKTAYHALPAADHSARSKSVMYQSMTSIPALQPTSTITNKPAL 605
           AAV  ++     +HA  +  HSA S +  Y     +P + P+  I+  P L
Sbjct: 587 AAVDVMVAASIVHHAKTSLMHSAASSTPSYNGERIVPDV-PSPCISTNPNL 636


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,132
Number of Sequences: 5004
Number of extensions: 64645
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)