Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0166
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0047 + 14430437-14430463,14430615-14430714,14431076-144311... 31 1.3
05_01_0482 + 4016784-4017323 30 1.8
10_02_0170 + 6147026-6147443,6147969-6147994 29 3.1
09_01_0173 + 2495864-2496312,2497420-2497457,2497915-2498123,249... 29 3.1
07_01_0310 + 2209084-2209554 29 3.1
05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,322... 29 4.1
01_01_0137 + 1249081-1249341,1249500-1250237 29 4.1
11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,378... 29 5.4
01_01_0136 + 1237623-1237820,1238313-1239001,1239978-1240308,124... 29 5.4
01_01_0907 + 7128397-7128497,7129944-7130022,7130470-7130568,713... 28 7.2
06_03_0739 + 24004629-24005219 28 9.5
03_05_0370 + 23541188-23542537 28 9.5
>10_08_0047 +
14430437-14430463,14430615-14430714,14431076-14431153,
14431340-14431427,14431536-14431640,14431998-14432540,
14433023-14433157,14433256-14433364,14433578-14433726,
14433800-14434046
Length = 526
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 383 DKGSVLKWAXVIDEFLNQYRKKGSGSGEAHGAENRVPCSPSSGPLGE 523
D G KW ++ LN G G G G R P SP+ P+ E
Sbjct: 150 DNGPARKWVSLVRRTLNSLAGTGGGGGGGGGGGMRTP-SPAPDPVVE 195
>05_01_0482 + 4016784-4017323
Length = 179
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 523 LAEWSAAGRAWYAVFGTMSFTTAAAFLTVLI 431
L E G WY +F T++FT A A L L+
Sbjct: 63 LTEGQMRGIRWYIMFNTVTFTIALALLITLV 93
>10_02_0170 + 6147026-6147443,6147969-6147994
Length = 147
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +3
Query: 405 GPXLLTNF*INTVRKAAAVVKLMVPKTAYHALPAADHSARSKSVMYQSMTSIPALQPTST 584
GP LL + AA+ VP A LPA +A + ++ + + + L P +T
Sbjct: 5 GPFLLAAMAVAAAVAAASETATTVPVAALPPLPALPVTAAASTLQPGTASCMDDLMPCAT 64
Query: 585 ITNKPAL 605
+++ P +
Sbjct: 65 VSDDPTM 71
>09_01_0173 +
2495864-2496312,2497420-2497457,2497915-2498123,
2498894-2499205
Length = 335
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 185 AGSLPSLSLCARGPGPSPSCTGRS*TPPI 99
+ SL +LSLC + P PSP + R P +
Sbjct: 4 SSSLSTLSLCTQSPSPSPVASARLVAPAV 32
>07_01_0310 + 2209084-2209554
Length = 156
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +3
Query: 432 INTVRKAAAVVKLMVPKTAYHALPAADHSARSKSVMYQSMTSIPALQPTSTITNKPAL 605
+ TV AA VPK A +PA +V M ++PA+ PT+T+ PA+
Sbjct: 50 VPTVPNAALPPMPAVPKVALPPMPAVPAVPTVPAVALPPMPAVPAV-PTATLPPMPAV 106
>05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,
32233-33714
Length = 1189
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/69 (24%), Positives = 29/69 (42%)
Frame = -1
Query: 493 WYAVFGTMSFTTAAAFLTVLIQKFVNNXGPFEHRSLIVDLVIDQSTFHVGSIWHWPEAQT 314
W + G M++ A+ + + F +VDL I T + +W AQ
Sbjct: 987 WSRLLGWMAYGVASGVIIFFLTSAALQHQAFRRGGEVVDLAILSGTAYTCVVWA-VNAQM 1045
Query: 313 WITADY*TI 287
+TA+Y T+
Sbjct: 1046 TVTANYFTL 1054
>01_01_0137 + 1249081-1249341,1249500-1250237
Length = 332
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 65 QLLCSCPPCSHDEPDCGLR 9
Q C C PCS +P CG R
Sbjct: 149 QRACPCAPCSCPDPGCGFR 167
>11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,
3783373-3783521,3783886-3784039,3784110-3784205,
3784290-3784379,3784856-3785014,3785150-3785371,
3785552-3785668,3785753-3785824,3786768-3786836,
3786947-3787051,3787248-3787562,3787814-3788809
Length = 947
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 386 KGSVLKWAXVIDEFLNQYRKKGSGSGEAHGAENRVPCSPSS 508
+GS+++ A +DEFLNQ + GE + EN+ + S
Sbjct: 895 EGSIIRLARRLDEFLNQLKAAAQAVGEVN-LENKFGAASDS 934
>01_01_0136 +
1237623-1237820,1238313-1239001,1239978-1240308,
1240614-1241351
Length = 651
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 65 QLLCSCPPCSHDEPDCGLRS 6
Q C C PCS EP C RS
Sbjct: 469 QRACPCAPCSCPEPGCRFRS 488
>01_01_0907 +
7128397-7128497,7129944-7130022,7130470-7130568,
7130654-7130767,7130960-7131102,7131716-7131797,
7132425-7132510,7132879-7133112,7134684-7135162,
7135309-7136027
Length = 711
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 85 TGPXEMGGVQDLPVQLGDGPGPRAHRLKLGKDPAIL 192
T +MGG+Q L Q+ GP+AH++ + P +
Sbjct: 517 TPSNQMGGMQPLHPQMNQMGGPQAHQMYNNQQPGAM 552
>06_03_0739 + 24004629-24005219
Length = 196
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Frame = +2
Query: 503 SSGPLGEKQVCDVPVDDFNPCTPANQYNYE--QAGPCVFLKLNKIYNWX------PQPYN 658
++ +G+ ++C + + PC Q+ E AG + + W P+P+
Sbjct: 50 NAAAVGKSKLCAIAISHM-PCGHCRQFLQEIRGAGGIRIIVTSSDAKWRTVSSLLPRPFG 108
Query: 659 NTEDLPTNMPEDLKQHIKTLAGKP 730
+ LP ++P LK H L G P
Sbjct: 109 PHDLLPKHVPLVLKPHDSPLVGNP 132
>03_05_0370 + 23541188-23542537
Length = 449
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 548 RLVHHRLASRRVVRCWESMVRGFRHH 471
R+V R+A R VV W SM+ + HH
Sbjct: 252 RMVFDRMACRNVVS-WSSMIDAYSHH 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,985,890
Number of Sequences: 37544
Number of extensions: 517190
Number of successful extensions: 1620
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1620
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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