Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0166
(775 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7992| Best HMM Match : No HMM Matches (HMM E-Value=.) 96 3e-20
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 29 4.2
SB_4559| Best HMM Match : ICAM_N (HMM E-Value=5.3) 29 4.2
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0) 29 5.5
SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29) 28 7.3
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_51664| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_7992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 95.9 bits (228), Expect = 3e-20
Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 3/184 (1%)
Frame = +2
Query: 110 FRIFLYNSETGQVLGRTGSSWAKXXXXXXXXXXXXVGFFAALLAVFYQTLDTKVPKWQLD 289
F+ FLYN E G+V+GR G SWAK GFFAA+L++F TL + +L
Sbjct: 24 FKTFLYNKEKGEVMGRNGQSWAKIGLFFLVFYLCLAGFFAAMLSIFLSTLPDRADGPKLT 83
Query: 290 SSIIGSNPGLGFRPMPDTANVESTLIYYKVNDKGSVLKWAXVIDEFLNQYRKKGSGSGEA 469
I G P L P+P +E Y N S I+ FLNQY ++G + +
Sbjct: 84 QYIAG-KPVL--NPVPSN-KIEG----YDPNKASSYSSHVSDINSFLNQYVRQGGANKDQ 135
Query: 470 HGAENRVPCSPSSGPLGEKQVCDVPVDDFNPC---TPANQYNYEQAGPCVFLKLNKIYNW 640
+ S P K+ C + + PC +Y ++ PC FL++NK++N+
Sbjct: 136 FAPDFCNGTSGEPRPKDAKKQCRFDLTNLGPCYKNETGFKYGFDTGSPCFFLRMNKVFNF 195
Query: 641 XPQP 652
P+P
Sbjct: 196 VPEP 199
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 332 MPDTANVESTLIYYKVNDKGSVLKWAXVIDEFLNQYRKKGSGSGEAHGAENRVPCSPS 505
+PD + ST +V +KG+++K A +ID +R + G H + VP SP+
Sbjct: 330 IPDFKDCSSTNQTERVEEKGALIKKA-MIDSSREDFRDQAHGEHVTHPIKWLVPSSPT 386
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 159 VRPRTWPVSELYRKILNASHFXRSGGGA*YCS-ATLFLSAMFTR 31
+ P++WP +++YR++L+ GG Y AT A+F +
Sbjct: 405 IYPKSWPENDIYRQVLSILLMVNVGGALLYLGLATFSYYAIFDK 448
>SB_4559| Best HMM Match : ICAM_N (HMM E-Value=5.3)
Length = 244
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/78 (25%), Positives = 31/78 (39%)
Frame = +2
Query: 305 SNPGLGFRPMPDTANVESTLIYYKVNDKGSVLKWAXVIDEFLNQYRKKGSGSGEAHGAEN 484
+ P G R A E L YY D+G ++ L++Y S +HG +
Sbjct: 34 NRPTRGERRFAYWALAECILAYYVGTDEGVSEVLHVAGEKRLHRYYYTSSNDSHSHGETD 93
Query: 485 RVPCSPSSGPLGEKQVCD 538
S LGE+ +C+
Sbjct: 94 SNSSGQSDVSLGEEAICN 111
>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2916
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 173 PSLSLCARGPGPSPSCTGRS*TPPISXGPVA 81
P+ + A G GP PS TG++ P +S PVA
Sbjct: 2311 PTTTSVAMGAGPPPSATGQA-LPVMSPAPVA 2340
>SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0)
Length = 229
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +1
Query: 157 HRLKL-GKDPAILPYLLRDFGGLLRCS--ASGI 246
H LK+ KDP + L+ FGG++ CS ASGI
Sbjct: 142 HALKIVSKDPRVKVILVNIFGGIVDCSVVASGI 174
>SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)
Length = 1890
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 570 GVQGLKSSTGTSQTCFSPSGPL 505
G +G SS GT Q +SP GP+
Sbjct: 479 GTRGRTSSVGTGQQSYSPQGPV 500
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 434 QYRKKGSGSGEAHGAENRVPCSPSSGPLGEKQVCDV 541
+Y GS S E ++ +PC P+GE+++ DV
Sbjct: 1636 KYNMAGSVSHEPAAHDSVMPCKIGVKPMGEREMSDV 1671
>SB_51664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -3
Query: 611 RRKGRLVRNCTGWLECRD*SHRLVHHRLASRRVVRCWESMVRGFRHH 471
+ +GR +RNCT C R H+ + +E++ G HH
Sbjct: 34 KTRGRNIRNCTSGTLCCRVGRRAARHQAIAPLYTCRYEAVWAGLDHH 80
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,977,484
Number of Sequences: 59808
Number of extensions: 547939
Number of successful extensions: 1541
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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