Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0166
         (775 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY330176-1|AAQ16282.1|  179|Anopheles gambiae odorant-binding pr...    25   3.4  
AJ618926-1|CAF02005.1|  315|Anopheles gambiae odorant-binding pr...    25   3.4  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    24   6.0  

>AY330176-1|AAQ16282.1|  179|Anopheles gambiae odorant-binding
           protein AgamOBP49 protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 104 PISXGPVAERNTVQLLCSCPPCSHDEPDC 18
           PIS   VAE+   +L  + PP S D P C
Sbjct: 46  PISTEEVAEKCYQELAPNIPPNSSDFPVC 74


>AJ618926-1|CAF02005.1|  315|Anopheles gambiae odorant-binding
           protein OBPjj6b protein.
          Length = 315

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 104 PISXGPVAERNTVQLLCSCPPCSHDEPDC 18
           PIS   VAE+   +L  + PP S D P C
Sbjct: 46  PISTEEVAEKCYQELAPNIPPNSSDFPVC 74


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = -1

Query: 457 AAAFLTVLIQKFVNNXGPFEHRSLIVDLVIDQSTFHVGSIWH 332
           A   +  + Q   N+ GP   R  ++  V D +  +   +WH
Sbjct: 769 ATQIVQAVTQLMPNHRGPKTSRCRLLAAVADSTMRYAAPVWH 810


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 837,484
Number of Sequences: 2352
Number of extensions: 18464
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 80665782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)