Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0166
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81550-4|CAB04477.1|  317|Caenorhabditis elegans Hypothetical pr...   106   2e-23
Z81037-5|CAB02752.1|  320|Caenorhabditis elegans Hypothetical pr...   105   5e-23
Z82262-6|CAB05149.1|  374|Caenorhabditis elegans Hypothetical pr...    42   5e-04
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    29   3.7  
L16621-5|AAA28230.1|  214|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    28   8.5  

>Z81550-4|CAB04477.1|  317|Caenorhabditis elegans Hypothetical
           protein F55F3.3 protein.
          Length = 317

 Score =  106 bits (255), Expect = 2e-23
 Identities = 62/203 (30%), Positives = 103/203 (50%)
 Frame = +2

Query: 104 EAFRIFLYNSETGQVLGRTGSSWAKXXXXXXXXXXXXVGFFAALLAVFYQTLDTKVPKWQ 283
           E F  FLYN + G VLGRTG+SW +              FF   L++F +TLD KVP++ 
Sbjct: 24  ETFAQFLYNKDKGTVLGRTGTSWCQITVFYIIFYIFLSAFFIGCLSIFLRTLDPKVPRFY 83

Query: 284 LDSSIIGSNPGLGFRPMPDTANVESTLIYYKVNDKGSVLKWAXVIDEFLNQYRKKGSGSG 463
              +IIG NPG+G++P     N +STLI + + D  S   +   +D +L++Y K  + + 
Sbjct: 84  GKGTIIGVNPGVGYQPWL-KENPDSTLIKFNLQDSKSWEPYVKQLDNYLSKY-KNTNETR 141

Query: 464 EAHGAENRVPCSPSSGPLGEKQVCDVPVDDFNPCTPANQYNYEQAGPCVFLKLNKIYNWX 643
           +   ++N       +     +   D+ + +   C   +QY Y+   PCV + LN++  W 
Sbjct: 142 DCGASDNNDALETDTDTFPCR--FDLGLFEKANCGAKDQYGYKSGKPCVAVSLNRLIGWR 199

Query: 644 PQPYNNTEDLPTNMPEDLKQHIK 712
           P  Y++      ++PE++K   K
Sbjct: 200 PVNYDD-----GSVPEEIKGRYK 217


>Z81037-5|CAB02752.1|  320|Caenorhabditis elegans Hypothetical
           protein C17E4.9 protein.
          Length = 320

 Score =  105 bits (251), Expect = 5e-23
 Identities = 60/203 (29%), Positives = 97/203 (47%)
 Frame = +2

Query: 104 EAFRIFLYNSETGQVLGRTGSSWAKXXXXXXXXXXXXVGFFAALLAVFYQTLDTKVPKWQ 283
           E FR FLYN + G V+GRTG SW +              F+   L +F +TLD KVP++ 
Sbjct: 27  ETFREFLYNKKNGTVMGRTGKSWFQIIVFYIIFYAFLAAFWLTCLTIFMKTLDPKVPRFY 86

Query: 284 LDSSIIGSNPGLGFRPMPDTANVESTLIYYKVNDKGSVLKWAXVIDEFLNQYRKKGSGSG 463
              +IIG NPG+G++P       +STLI Y + D+ S   +   +  +L +Y    + + 
Sbjct: 87  GKGTIIGVNPGVGYQPWL-KERPDSTLIKYNLRDQKSYKAYLEQMKTYLTKYDSNATETR 145

Query: 464 EAHGAENRVPCSPSSGPLGEKQVCDVPVDDFNPCTPANQYNYEQAGPCVFLKLNKIYNWX 643
           E    ++      +   L  +   D+ V D   C+  + + Y+   PCV + LN++  W 
Sbjct: 146 ECGAGDSNDDLEKNPDALPCR--FDLSVFD-KGCSEKSDFGYKSGKPCVIISLNRLIGWR 202

Query: 644 PQPYNNTEDLPTNMPEDLKQHIK 712
           P  Y        ++PE++K   K
Sbjct: 203 PTDYQE-----NSVPEEVKDRYK 220


>Z82262-6|CAB05149.1|  374|Caenorhabditis elegans Hypothetical
           protein C43F9.6 protein.
          Length = 374

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 10/160 (6%)
 Frame = +2

Query: 230 ALLAVFYQTLDTKVPKWQLDSSIIGSNPGLGFRPMPDTANVESTLIYYKVNDKGSVLKWA 409
           AL+   +  LD + P +  D S +G  P + F P P     + T    K     ++ +++
Sbjct: 123 ALVWFNFSRLDRQYPIYFGDGSFLGGAPKVSFDPNPRQFLEDGT----KNAMSWNIYEFS 178

Query: 410 XVIDEFLN--QYRKKGSGSGEAHGAENRVPCSPSSGPLGEKQVCDVP-VDDFNPCTPA-- 574
             ++  +   Q  KK SG       +    C   +  +  +  C    + DF  CT +  
Sbjct: 179 TYVNYLIRYKQVLKKYSGGIGKQKVKKEEMCKNQT--MTRENACKFDRLTDFGECTLSLD 236

Query: 575 ---NQYNYEQAGPCVFLKLNKIYNWXP--QPYNNTEDLPT 679
                + Y +  PC+ LKLNKI  W P   P  N    P+
Sbjct: 237 NLERGFGYSKGQPCIMLKLNKIVGWVPNLSPSKNKTKCPS 276


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical
           protein F32H2.5 protein.
          Length = 2586

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 373 VIDQSTFHVGSIWHWPEAQTWITAD 299
           V+ + T  +G +W W   Q W+T D
Sbjct: 840 VVPKGTPMIGPMWKWDHTQDWLTID 864


>L16621-5|AAA28230.1|  214|Caenorhabditis elegans Hypothetical
           protein ZK688.3 protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 278 WQLDSSIIGSNPGLGFRPMPDTANVESTLIYYKVNDK 388
           W L  S  GS P  GF P+ D  N     ++ K+N K
Sbjct: 113 WFLAKSFDGSCPIGGFLPVSDIPNPHDVELFCKINGK 149


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 31   SCEHGGQEQSS*TVLRSATGPXEMGGVQDLPVQLGDGP 144
            S EH G E+     + +  G  +M   QD P+   D P
Sbjct: 2404 SSEHAGDEEVRDDAVETGDGEVDMADAQDAPLAAPDAP 2441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,992,094
Number of Sequences: 27780
Number of extensions: 389715
Number of successful extensions: 1046
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)