Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0166
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase fa...    29   2.6  
At1g80310.1 68414.m09402 expressed protein                             29   2.6  
At4g20770.1 68417.m03016 pentatricopeptide (PPR) repeat-containi...    29   4.5  
At4g11460.1 68417.m01844 protein kinase family protein contains ...    29   4.5  
At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA he...    29   4.5  
At1g80630.1 68414.m09462 leucine-rich repeat family protein            28   6.0  
At1g55900.1 68414.m06411 NLI interacting factor (NIF) family pro...    28   6.0  
At1g20760.1 68414.m02600 calcium-binding EF hand family protein ...    28   7.9  

>At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase
           family protein similar to inositol polyphosphate
           5-phosphatase I (GI:10444261) and II (GI:10444263)
           [Arabidopsis thaliana];  contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 529

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 377 VNDKGSVLKWAXVIDEFLNQYRKKGSGSGEAHGAENRVPCSPSS 508
           V D     KW  +I + LN+ +++   S  A+ A     CS SS
Sbjct: 124 VEDNEPAAKWLALISQALNKPKQESVYSNAAYSASRTTTCSSSS 167


>At1g80310.1 68414.m09402 expressed protein
          Length = 464

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 714 VLMCCLRSSGMFVGRSSVLLYGCGXQLYILLSLR 613
           +++ C   S    G S+ L +GCG  LY+LL LR
Sbjct: 405 IMLVCAAVS--MTGSSAALGFGCGVVLYLLLKLR 436


>At4g20770.1 68417.m03016 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 740

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 512 VRCWESMVRGFRHHEL 465
           + CW SM+ GFRH+ L
Sbjct: 449 IACWNSMISGFRHNML 464


>At4g11460.1 68417.m01844 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 700

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/70 (27%), Positives = 23/70 (32%)
 Frame = +2

Query: 494 CSPSSGPLGEKQVCDVPVDDFNPCTPANQYNYEQAGPCVFLKLNKIYNWXPQPYNNTEDL 673
           C+P   P          VDD+  C    Q  Y     C+F        W   P+N   DL
Sbjct: 204 CTPDVSPSNCNTCLKQSVDDYVGCCHGKQGGYVYRPSCIF-------RWDLYPFNGAFDL 256

Query: 674 PTNMPEDLKQ 703
            T  P    Q
Sbjct: 257 LTLAPPPSSQ 266


>At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA
            helicase, putative nearly identical to HUA enhancer 2
            [Arabidopsis thaliana] GI:16024936
          Length = 995

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 386  KGSVLKWAXVIDEFLNQYRKKGSGSGEA 469
            +GS+++ A  +DEFLNQ R      GE+
Sbjct: 943  EGSIIRSARRLDEFLNQLRAAAEAVGES 970


>At1g80630.1 68414.m09462 leucine-rich repeat family protein
          Length = 578

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -2

Query: 363 RVLSTLAVSGIGLKPRPGLL 304
           R L +LA++GIGL+PR  LL
Sbjct: 215 RNLESLAINGIGLRPRESLL 234


>At1g55900.1 68414.m06411 NLI interacting factor (NIF) family
           protein contains Pfam profile PF03031: NLI interacting
           factor
          Length = 376

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
 Frame = -1

Query: 568 SAGIEVIDWYITDLLLAEWSAAGRA--WYAVFGTMSFTTAAAFLTVLIQKFVNNXGPFEH 395
           S+GI+VID Y T L  A  + + RA   Y     +       F   L +K + +  P E 
Sbjct: 129 SSGIDVIDKYQTKLYSAAMTGSARAIDKYLELREIVEEQVKGFTEPLSEKLLPDLHPAEQ 188

Query: 394 RSLIVDLVIDQSTFHVGSIWHWPEAQTWITADY*TIKLPLRHLG 263
               + L ++++  +      W   + W T     +   L HLG
Sbjct: 189 HVFTLVLDLNETLLYT----DWKRERGWRTFKRPGVDAFLEHLG 228


>At1g20760.1 68414.m02600 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 1019

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 455 GSGEAHGAENRVPCSPSSGPLGEKQVCDVPVDDFNPCTPANQY 583
           GSG+  G       SPSS   G ++      DD  P TP +++
Sbjct: 833 GSGDDFGGNTARADSPSSRSFGAQRKSQFAFDDSVPSTPLSRF 875


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,337,028
Number of Sequences: 28952
Number of extensions: 373625
Number of successful extensions: 1012
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)