Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0164
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    41   2e-04
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    39   0.001
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    37   0.003
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    32   0.11 
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    29   0.58 
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    29   0.58 
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    28   1.8  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   4.1  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   9.4  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    25   9.4  

>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 24/63 (38%), Positives = 32/63 (50%)
 Frame = +2

Query: 482 SQWDTSADENAEYXVERIL*VHHKKNGKREFLIHWKGWSSKFDSWEPESNLNCSEL*RSS 661
           ++ +T AD    Y VE IL     KNG  E+ I W G+    ++WEPE NL  +E     
Sbjct: 13  NEGETDADV---YEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKK 69

Query: 662 WIK 670
           W K
Sbjct: 70  WKK 72



 Score = 33.9 bits (74), Expect = 0.027
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 248 ILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELIGK 370
           + D     G   Y I+W GY    +TWEPEQ L   E + K
Sbjct: 28  LADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLK 68


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +2

Query: 515 EYXVERIL*VHHKKNGK-REFLIHWKGWSSKFDSWEPESNLN-CS 643
           EY VERI+     +NG  + + I W  +SS+ D+WEP  NL+ CS
Sbjct: 7   EYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCS 51



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 284 YLIRWKGYSADSDTWEPEQTLS-CPELIGKF 373
           Y IRW  YS+ SDTWEP + LS C  ++ ++
Sbjct: 27  YRIRWLNYSSRSDTWEPPENLSGCSAVLAEW 57


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +2

Query: 476 AKSQWDTSADENAEYXVERIL*VHH--KKNGKREFLIHWKGWSSKFD-SWEPESNLN-CS 643
           AK +     +E  EY VE++L  H   +K G  E+L+ W+G+    D +W  E++ + C 
Sbjct: 67  AKEEEGGEEEEEDEYVVEKVL-KHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCK 125

Query: 644 EL*RSSW 664
           +L  + W
Sbjct: 126 QLIEAYW 132



 Score = 31.1 bits (67), Expect = 0.19
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 272 GKLHYLIRWKGYSADSD-TWEPEQTLS-CPELI 364
           G   YL++W+GY   SD TW  E   S C +LI
Sbjct: 96  GGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLI 128


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +2

Query: 248 ILDS--KKIKGKLHYLIRWKGYSADSD-TWEPEQTLS-CPELIGKF 373
           ILDS  KK      Y ++W+GY   SD TW  E+  + C ELI  +
Sbjct: 181 ILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELIDAY 226


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 572 FLIHWKGWSSKFDSWEPESNL 634
           +LIH+KGW + +D W  +  +
Sbjct: 36  YLIHYKGWKNSWDEWVEQDRI 56


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 524 VERIL*VHHKKNGKREFLIHWKGWSSKFDSWEPES 628
           V+RI+  H   +G  E+L+ WK     F +WE  S
Sbjct: 290 VDRIVAKHLNSDGSVEYLVKWKQLLYDFCTWEASS 324



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 569 EFLIHWKGWSSKFDSWEPESNLN 637
           EFLI W  +S    +WEP +N++
Sbjct: 215 EFLIKWVNFSHLHCTWEPYNNIS 237



 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 272 GKLHYLIRWKGYSADSDTWE 331
           G + YL++WK    D  TWE
Sbjct: 302 GSVEYLVKWKQLLYDFCTWE 321


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 269 KGKLHYLIRWKGYSADSDTWEPEQTLS 349
           K    YLI+W+  S   +TWE   TLS
Sbjct: 227 KSSYQYLIKWQEVSHLHNTWEDYSTLS 253



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 269 KGKLHYLIRWKGYSADSDTWE 331
           +GK  Y ++W+    D+ TWE
Sbjct: 317 EGKTEYFVKWRQLPYDNCTWE 337


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
 Frame = +3

Query: 291 FAGKDILQTVILGNLSKLCLVLN*SENLMKKRRI-----LKIRNENLVL 422
           + G+  L+ ++  N+S +CLV   S+   K+R I     L+I +EN+++
Sbjct: 655 YFGRRFLEYLVKLNISVVCLVRESSDEAAKERLISLVPSLRISSENIIV 703


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 20   DDVVSSTNGSLLNDDQTATENKTVESVTDESVDQNND 130
            +D+ +    + ++ DQTA +NK  +   DES     D
Sbjct: 1848 EDIPNKRAKNKVSTDQTAADNKVTKPRLDESSSSKQD 1884


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 738 VKRXVVSGATLQISGIQXTGAAHFIHELL*SSEQFRLLSGSHESNLLDQPFQWIKN 571
           V+R V  G+TL  S  + T     + ELL     FR +   H +   DQ  + I++
Sbjct: 292 VERMVRQGSTLSHSEDRFTIREKKVRELLSGRYDFRKVEDDHSTTASDQKKKLIED 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,162
Number of Sequences: 5004
Number of extensions: 41771
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)