Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0164
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 42 6e-04
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 40 0.002
10_01_0028 - 359988-359996,360228-360332,360415-360536,360676-36... 39 0.004
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 31 0.79
10_05_0046 + 8516043-8516425,8517908-8518019,8518276-8518377,851... 29 5.6
10_02_0141 + 5761931-5762020,5762170-5762201,5762453-5762604,576... 28 9.8
>03_02_0234 +
6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 41.9 bits (94), Expect = 6e-04
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 269 KGKLHYLIRWKGYSADSDTWEPEQTLS-CPELIGKF 373
K L + +RWKGY DTWEP LS CPE I +F
Sbjct: 576 KNGLWFKVRWKGYDPSYDTWEPIDGLSDCPERIKEF 611
Score = 31.5 bits (68), Expect = 0.79
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 554 KNGKREFLIHWKGWSSKFDSWEPESNL-NCSE 646
KNG F + WKG+ +D+WEP L +C E
Sbjct: 576 KNGLW-FKVRWKGYDPSYDTWEPIDGLSDCPE 606
>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 257 SKKIKGKLHYLIRWKGYSADSDTWEPEQTL-SCPELIGKF 373
+K K L++ +RWKGY DTWEP + L +C E I F
Sbjct: 949 NKVSKHGLYFKVRWKGYGPHHDTWEPVEGLRNCKEAIRDF 988
Score = 31.9 bits (69), Expect = 0.60
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 572 FLIHWKGWSSKFDSWEPESNL-NCSE 646
F + WKG+ D+WEP L NC E
Sbjct: 958 FKVRWKGYGPHHDTWEPVEGLRNCKE 983
>10_01_0028 -
359988-359996,360228-360332,360415-360536,360676-360763,
360988-361056,361132-361461,361544-361610,361695-361753,
361838-362056,362224-362289,362370-362500,362683-362782,
362864-363001,363111-363218,363627-363723,363806-364257
Length = 719
Score = 39.1 bits (87), Expect = 0.004
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 278 LHYLIRWKGYSADSDTWEPEQTL-SCPELIGKF 373
L++ ++WKGY + DTWEP + L CP I +F
Sbjct: 434 LYFKVQWKGYGREEDTWEPIENLRDCPLKIKEF 466
Score = 35.1 bits (77), Expect = 0.064
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +2
Query: 506 ENAEYXVERIL*VHHKKNGKRE---FLIHWKGWSSKFDSWEPESNL 634
E E+ VE++ + + +G+ + F + WKG+ + D+WEP NL
Sbjct: 411 EKDEFVVEKLAGICYGGSGREDGLYFKVQWKGYGREEDTWEPIENL 456
>06_01_0584 -
4178391-4178732,4178854-4178915,4180361-4180481,
4180592-4180732,4180830-4180959,4182306-4182436,
4182528-4182601,4182680-4182741,4183135-4183209,
4184658-4184760,4184835-4184991,4185549-4185743,
4186204-4186282,4186697-4186806,4187249-4187374,
4187475-4187541,4187622-4187791,4187880-4188018,
4188361-4188522,4188672-4188772,4188852-4188994,
4189438-4189537,4190364-4190414,4191062-4191169,
4191279-4191494,4191585-4191721,4191820-4191915,
4192017-4192234,4192764-4192925,4193006-4193163,
4194221-4194379
Length = 1364
Score = 31.5 bits (68), Expect = 0.79
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 479 KSQWDTSADENAEYXVERIL*VHHKKNGKREFLIHWKGWSSKFDSWEPESNL 634
KS D SA V+RIL G+RE+ + WK + +WE +S++
Sbjct: 138 KSDDDYSAIRPEWTTVDRILATRKSSTGEREYYVKWKELTYDECTWENDSDI 189
>10_05_0046 +
8516043-8516425,8517908-8518019,8518276-8518377,
8518605-8518657,8518976-8519062,8519162-8519830,
8520154-8520214,8520295-8520342
Length = 504
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 269 KGKLHYLIRWKGYSADSDTWEPEQTLSCPELIGK 370
KGKL YL++W G + W+ L+ PEL G+
Sbjct: 119 KGKLQYLVKW-GSQWEGGAWD----LAAPELSGR 147
>10_02_0141 +
5761931-5762020,5762170-5762201,5762453-5762604,
5763688-5763770,5764689-5764766,5764884-5764979,
5765076-5765345
Length = 266
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 297 GKDILQTVILGNLSKLCLVLN*SENLMKKRRI 392
G + +++LG SK+C+V + E+L KK I
Sbjct: 71 GNTLAMSILLGAYSKMCMVASTLEHLRKKIEI 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,005,388
Number of Sequences: 37544
Number of extensions: 242317
Number of successful extensions: 647
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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