Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0164
(793 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23) 56 4e-08
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27) 56 4e-08
SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16) 44 1e-04
SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16) 44 1e-04
SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10) 43 2e-04
SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10) 40 0.003
SB_51384| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_18195| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.087
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_21821| Best HMM Match : MRG (HMM E-Value=0) 33 0.20
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 33 0.35
SB_21158| Best HMM Match : Chromo (HMM E-Value=0.00035) 33 0.35
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 30 2.5
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 29 4.3
SB_46930| Best HMM Match : PWWP (HMM E-Value=0.017) 29 4.3
SB_46122| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_25081| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09) 28 7.5
SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_44597| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 10.0
>SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)
Length = 226
Score = 55.6 bits (128), Expect = 4e-08
Identities = 20/43 (46%), Positives = 30/43 (69%)
Frame = +2
Query: 245 KILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELIGKF 373
K++D + I G + YL++WKGY +TWE E+ L CPELI ++
Sbjct: 32 KVMDKRVINGGIEYLLKWKGYPDSENTWESEEGLQCPELIEEY 74
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 515 EYXVERIL*VHHKKNGKREFLIHWKGWSSKFDSWEPESNLNCSEL 649
EY VE+++ NG E+L+ WKG+ ++WE E L C EL
Sbjct: 27 EYEVEKVM-DKRVINGGIEYLLKWKGYPDSENTWESEEGLQCPEL 70
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +2
Query: 248 ILDSKKIKGKLHYLIRWKGYSADSDTWEPEQ--TLSCPELIGKF 373
IL + ++ G++H+LI+WK S D P + L P+++ KF
Sbjct: 134 ILGATEVDGQIHFLIQWK--STDRADLIPSKVANLKWPQIVIKF 175
>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
Length = 1373
Score = 55.6 bits (128), Expect = 4e-08
Identities = 24/44 (54%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +2
Query: 245 KILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTL-SCPELIGKF 373
KILD + +GK+ YL+RWKGY DTWEP + L C ELI F
Sbjct: 909 KILDRRVQRGKVEYLVRWKGYGPADDTWEPSKNLKGCKELIDNF 952
Score = 41.5 bits (93), Expect = 8e-04
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 524 VERIL*VHHKKNGKREFLIHWKGWSSKFDSWEPESNL-NCSEL 649
VE+IL + GK E+L+ WKG+ D+WEP NL C EL
Sbjct: 907 VEKIL-DRRVQRGKVEYLVRWKGYGPADDTWEPSKNLKGCKEL 948
>SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)
Length = 1456
Score = 44.4 bits (100), Expect = 1e-04
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +2
Query: 518 YXVERIL*VHHKKNGKREFLIHWKGWSSKFDSWEPESNLN 637
+ ++R+L K+ G+ E+ +HWKGW K++SW P + +N
Sbjct: 1227 FKIDRVLKTW-KRGGRGEYWVHWKGWPDKYNSWVPATEVN 1265
>SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)
Length = 411
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 248 ILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELI 364
IL + GK+ Y I+WKGYS +TWEPE+ + P L+
Sbjct: 30 ILKERVRDGKVWYFIKWKGYSQRYNTWEPEENVLDPRLL 68
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +2
Query: 518 YXVERIL*VHHKKNGKREFLIHWKGWSSKFDSWEPESNL 634
Y E IL ++GK + I WKG+S ++++WEPE N+
Sbjct: 25 YAAETIL-KERVRDGKVWYFIKWKGYSQRYNTWEPEENV 62
>SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10)
Length = 517
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +2
Query: 272 GKLHYLIRWKGYSADSDTWEPEQTL-SCPELIGKF 373
G ++ +RWKGY+ D DTWEPE+ + C +++ +F
Sbjct: 15 GVRYFKVRWKGYTPDDDTWEPEENVFECEDVLEEF 49
Score = 37.9 bits (84), Expect = 0.009
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 554 KNGKREFLIHWKGWSSKFDSWEPESNL-NCSEL*RSSW 664
++G R F + WKG++ D+WEPE N+ C ++ W
Sbjct: 13 QDGVRYFKVRWKGYTPDDDTWEPEENVFECEDVLEEFW 50
>SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)
Length = 1847
Score = 39.5 bits (88), Expect = 0.003
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 551 KKNGKREFLIHWKGWSSKFDSWEPESNLN 637
K+ G++ + +HWKGW K+ SW P + ++
Sbjct: 1086 KRGGRKVYWVHWKGWPDKYKSWVPATEVH 1114
>SB_51384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 38.3 bits (85), Expect = 0.007
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +2
Query: 560 GKREFLIHWKGWSSKFDSWEP 622
G R++ +HWKGW +K++SW P
Sbjct: 100 GARKYWVHWKGWPNKYNSWVP 120
>SB_18195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 34.7 bits (76), Expect = 0.087
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 551 KKNGKREFLIHWKGWSSKFDSWEPESNLNCSEL 649
KK + ++LI WK W +F SWEP ++L L
Sbjct: 150 KKIMEEQYLIKWKDWPLQFCSWEPVTHLTADLL 182
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 34.3 bits (75), Expect = 0.11
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 554 KNGKREFLIHWKGWSSKFDSWEPESNL 634
++GK E+L+HWK + +WEP NL
Sbjct: 34 QSGKEEYLVHWKKYKVWESTWEPLENL 60
Score = 32.3 bits (70), Expect = 0.46
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 272 GKLHYLIRWKGYSADSDTWEPEQTL 346
GK YL+ WK Y TWEP + L
Sbjct: 36 GKEEYLVHWKKYKVWESTWEPLENL 60
>SB_21821| Best HMM Match : MRG (HMM E-Value=0)
Length = 292
Score = 33.5 bits (73), Expect = 0.20
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 554 KNGKREFLIHWKGWSSKFDSWEPESNL 634
K +LIH+ GW+ +D W PES +
Sbjct: 32 KEKTARYLIHYNGWNKNWDEWVPESRV 58
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 32.7 bits (71), Expect = 0.35
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 518 YXVERIL*VHHKKNGKREFLIHWKGWSSK 604
+ ++R+L K+ G+ E+ +HWKGW K
Sbjct: 627 FKIDRVLKTR-KRGGRDEYWVHWKGWPDK 654
>SB_21158| Best HMM Match : Chromo (HMM E-Value=0.00035)
Length = 132
Score = 32.7 bits (71), Expect = 0.35
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 518 YXVERIL*VH-HKKNGKREFLIHWKGWSSKFDSWEPESNL 634
Y VERI+ +NG +E+L+ WK W + EP ++L
Sbjct: 41 YDVERIISQRITSRNGDKEYLVKWKNWPIWTSTLEPANHL 80
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 29.9 bits (64), Expect = 2.5
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 572 FLIHWKGWSSKFDSW 616
FLIH+ GW++++D W
Sbjct: 498 FLIHYAGWNNRYDEW 512
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 56 NDDQTATENKTVESVTDESVDQNNDDF 136
NDD++ +N + S+ DE ++ NND F
Sbjct: 1606 NDDRSTRQNLELTSLDDERLEPNNDRF 1632
>SB_46930| Best HMM Match : PWWP (HMM E-Value=0.017)
Length = 237
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 557 NGKREFLIHWKGWSSKFDSW 616
+GK+ LIH++GW+ +FD W
Sbjct: 39 HGKKA-LIHFEGWNHRFDEW 57
>SB_46122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 743
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 524 VERIL*VHHKKNGKREFLIHWKGWSSKF 607
++R+L + K N + EFL+ WK +S +
Sbjct: 364 IDRVLGMRQKSNSEYEFLVQWKDGTSNW 391
>SB_25081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 470
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 20 DDVVSSTNGSLLNDDQTATENKTVESVTDESVDQNNDD 133
DDV ++ + +DD AT++ V + D+ D ++DD
Sbjct: 9 DDVAAADDDVATDDDDVATDDDDVANDDDDDDDDDDDD 46
>SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09)
Length = 590
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 245 KILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELI 364
K+L+ ++ YL+ W S DS TWEP + LI
Sbjct: 405 KLLNCRRRSKTTEYLVLW---SDDSQTWEPRHNILDKRLI 441
>SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1198
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 245 KILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELI 364
K+L+ ++ YL+ W S DS TWEP + LI
Sbjct: 974 KLLNCRRRSKTTEYLVLW---SDDSQTWEPRHNILDKRLI 1010
>SB_44597| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 20 DDVVSSTNGSLLNDDQTATENKTVESVTDESVDQNND 130
DD+V N D + ++ +E V D+SVD +N+
Sbjct: 88 DDIVDDDNNIEDYYDDSVDDDSNIEDVYDDSVDDDNN 124
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 27.9 bits (59), Expect = 10.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -3
Query: 131 HHCFDRRFHQLQIRQFCSPSQFDRHLTKIH 42
HHC + +L + FC P +H++ +H
Sbjct: 3749 HHCRPSKTCELCSKMFCRPEYVAKHVSMVH 3778
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,497,121
Number of Sequences: 59808
Number of extensions: 292184
Number of successful extensions: 955
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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