Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0164
(793 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 47 2e-05
Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical pr... 46 3e-05
Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical pr... 46 3e-05
Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical pr... 46 3e-05
AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain... 46 3e-05
AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain... 46 3e-05
U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z36753-7|CAA85339.1| 339|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical pr... 39 0.004
AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromat... 39 0.004
U41992-6|AAA83357.1| 270|Caenorhabditis elegans Hypothetical pr... 38 0.006
U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 31 0.94
AL032626-25|CAH10813.1| 406|Caenorhabditis elegans Hypothetical... 30 1.7
AL032626-24|CAA21530.1| 499|Caenorhabditis elegans Hypothetical... 30 1.7
AF039049-3|AAB94251.2| 298|Caenorhabditis elegans Serpentine re... 29 5.0
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 28 6.7
AL032626-28|CAO82072.1| 337|Caenorhabditis elegans Hypothetical... 28 6.7
AL032626-8|CAA21528.1| 335|Caenorhabditis elegans Hypothetical ... 28 6.7
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 28 6.7
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 28 8.8
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 28 8.8
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/45 (48%), Positives = 27/45 (60%)
Frame = +2
Query: 500 ADENAEYXVERIL*VHHKKNGKREFLIHWKGWSSKFDSWEPESNL 634
AD + Y VE IL H KK GK EF I W G+ +SWEP+ N+
Sbjct: 2 ADGSELYTVESIL-EHRKKKGKSEFYIKWLGYDHTHNSWEPKENI 45
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2
Query: 248 ILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELIGKF 373
IL+ +K KGK + I+W GY ++WEP++ + P LI F
Sbjct: 13 ILEHRKKKGKSEFYIKWLGYDHTHNSWEPKENIVDPTLIEAF 54
>Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical
protein K01G5.2c protein.
Length = 303
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2
Query: 518 YXVERIL*VHHKKNGKREFLIHWKGWSSKFDSWEPESNLNCSEL 649
+ VE++L K G+ EFLI W+G+ SWEP NL C E+
Sbjct: 19 FMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEM 62
Score = 42.7 bits (96), Expect = 3e-04
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +2
Query: 245 KILDSKKIK-GKLHYLIRWKGYSADSDTWEPEQTLSCPELIGKF 373
K+LD + K G+ +LI+W+G+ +WEP + L C E++ +F
Sbjct: 23 KVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66
>Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical
protein K01G5.2b protein.
Length = 301
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2
Query: 518 YXVERIL*VHHKKNGKREFLIHWKGWSSKFDSWEPESNLNCSEL 649
+ VE++L K G+ EFLI W+G+ SWEP NL C E+
Sbjct: 19 FMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEM 62
Score = 42.7 bits (96), Expect = 3e-04
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +2
Query: 245 KILDSKKIK-GKLHYLIRWKGYSADSDTWEPEQTLSCPELIGKF 373
K+LD + K G+ +LI+W+G+ +WEP + L C E++ +F
Sbjct: 23 KVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66
>Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical
protein K01G5.2a protein.
Length = 175
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2
Query: 518 YXVERIL*VHHKKNGKREFLIHWKGWSSKFDSWEPESNLNCSEL 649
+ VE++L K G+ EFLI W+G+ SWEP NL C E+
Sbjct: 19 FMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEM 62
Score = 42.7 bits (96), Expect = 3e-04
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +2
Query: 245 KILDSKKIK-GKLHYLIRWKGYSADSDTWEPEQTLSCPELIGKF 373
K+LD + K G+ +LI+W+G+ +WEP + L C E++ +F
Sbjct: 23 KVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66
>AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain
protein protein.
Length = 175
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2
Query: 518 YXVERIL*VHHKKNGKREFLIHWKGWSSKFDSWEPESNLNCSEL 649
+ VE++L K G+ EFLI W+G+ SWEP NL C E+
Sbjct: 19 FMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEM 62
Score = 42.7 bits (96), Expect = 3e-04
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +2
Query: 245 KILDSKKIK-GKLHYLIRWKGYSADSDTWEPEQTLSCPELIGKF 373
K+LD + K G+ +LI+W+G+ +WEP + L C E++ +F
Sbjct: 23 KVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66
>AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain
protein protein.
Length = 301
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2
Query: 518 YXVERIL*VHHKKNGKREFLIHWKGWSSKFDSWEPESNLNCSEL 649
+ VE++L K G+ EFLI W+G+ SWEP NL C E+
Sbjct: 19 FMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEM 62
Score = 42.7 bits (96), Expect = 3e-04
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +2
Query: 245 KILDSKKIK-GKLHYLIRWKGYSADSDTWEPEQTLSCPELIGKF 373
K+LD + K G+ +LI+W+G+ +WEP + L C E++ +F
Sbjct: 23 KVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66
>U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical
protein T12E12.2 protein.
Length = 891
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +2
Query: 551 KKNGKREFLIHWKGWSSKFDSWEPESNL-NCSEL 649
+++ K +L+HW+G+ K +WEPE NL NC EL
Sbjct: 44 RRHSKYAYLVHWRGYDWKERTWEPEENLENCEEL 77
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 260 KKIKGKLHYLIRWKGYSADSDTWEPEQTL-SCPEL 361
K+ K YL+ W+GY TWEPE+ L +C EL
Sbjct: 43 KRRHSKYAYLVHWRGYDWKERTWEPEENLENCEEL 77
>Z36753-7|CAA85339.1| 339|Caenorhabditis elegans Hypothetical
protein T09A5.8 protein.
Length = 339
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/34 (52%), Positives = 20/34 (58%)
Frame = +2
Query: 245 KILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTL 346
KIL K L +RW GY AD DTWEPE+ L
Sbjct: 28 KILAHKVTDNLLVLQVRWLGYGADEDTWEPEEDL 61
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 518 YXVERIL*VHHKKNGKREFLIHWKGWSSKFDSWEPESNL 634
+ VE+IL H + + W G+ + D+WEPE +L
Sbjct: 24 FEVEKIL-AHKVTDNLLVLQVRWLGYGADEDTWEPEEDL 61
>Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical
protein K08H2.6 protein.
Length = 184
Score = 39.1 bits (87), Expect = 0.004
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 245 KILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELIGKF 373
K+L+ + +G Y I+W+G+ +WEP + L C +I ++
Sbjct: 41 KVLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQEY 83
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 518 YXVERIL*VHHKKNGKREFLIHWKGWSSKFDSWEPESNLNCSEL 649
+ VE++L + G E+ I W+G+ SWEP NL C +
Sbjct: 37 FVVEKVLNKRLTRGGS-EYYIKWQGFPESECSWEPIENLQCDRM 79
>AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromatin
protein 1 homolog protein.
Length = 184
Score = 39.1 bits (87), Expect = 0.004
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 245 KILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELIGKF 373
K+L+ + +G Y I+W+G+ +WEP + L C +I ++
Sbjct: 41 KVLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQEY 83
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 518 YXVERIL*VHHKKNGKREFLIHWKGWSSKFDSWEPESNLNCSEL 649
+ VE++L + G E+ I W+G+ SWEP NL C +
Sbjct: 37 FVVEKVLNKRLTRGGS-EYYIKWQGFPESECSWEPIENLQCDRM 79
>U41992-6|AAA83357.1| 270|Caenorhabditis elegans Hypothetical
protein F32E10.2 protein.
Length = 270
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Frame = +2
Query: 497 SADENAEYXVERIL*VHHKKNGKREFLIHWKG-----WSSKFDSWEPESNLNCSEL 649
S D + EY VER+L H K G +L+ WKG W+S + WE + + NC +L
Sbjct: 80 SDDSSGEYAVERVL-AHRKVKGSPLYLVQWKGYPHPVWNS--EMWEEDLD-NCKDL 131
Score = 35.1 bits (77), Expect = 0.058
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 245 KILDSKKIKGKLHYLIRWKGYSA---DSDTWEPEQTLSCPELIGKF 373
++L +K+KG YL++WKGY +S+ WE E +C +L+ +
Sbjct: 91 RVLAHRKVKGSPLYLVQWKGYPHPVWNSEMWE-EDLDNCKDLLAAY 135
>U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical
protein C29H12.5 protein.
Length = 706
Score = 32.3 bits (70), Expect = 0.41
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 572 FLIHWKGWSSKFDSWEPESNL 634
FL+ W G+ +K +WEPESN+
Sbjct: 95 FLVKWLGYGNKEMTWEPESNI 115
Score = 29.5 bits (63), Expect = 2.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 284 YLIRWKGYSADSDTWEPEQTL 346
+L++W GY TWEPE +
Sbjct: 95 FLVKWLGYGNKEMTWEPESNI 115
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
protein H06O01.2 protein.
Length = 1461
Score = 31.1 bits (67), Expect = 0.94
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 563 KREFLIHWKGWSSKFDSWEPESNL 634
+++F + W GWS ++WE E++L
Sbjct: 236 EQQFFVKWTGWSHLHNTWESENSL 259
>AL032626-25|CAH10813.1| 406|Caenorhabditis elegans Hypothetical
protein Y37D8A.11b protein.
Length = 406
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 554 KNGKREFLIHWKGWSSKFDSWEP 622
K+GK + IH+KGW++++D P
Sbjct: 258 KDGKECYCIHFKGWNNRYDEQIP 280
Score = 29.1 bits (62), Expect = 3.8
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +2
Query: 533 IL*VHHKKNGKREFLIHWKGWSSKFD 610
I+ + + + GK + +H+KGW+ ++D
Sbjct: 30 IIGIENNREGKECYCVHFKGWNCRYD 55
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 557 NGKREFLIHWKGWSSKFDSWEP 622
+GK + +H+KGW+S++D P
Sbjct: 361 DGKDFYCVHFKGWNSRYDEKIP 382
>AL032626-24|CAA21530.1| 499|Caenorhabditis elegans Hypothetical
protein Y37D8A.11a protein.
Length = 499
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 554 KNGKREFLIHWKGWSSKFDSWEP 622
K+GK + IH+KGW++++D P
Sbjct: 351 KDGKECYCIHFKGWNNRYDEQIP 373
Score = 29.1 bits (62), Expect = 3.8
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +2
Query: 533 IL*VHHKKNGKREFLIHWKGWSSKFD 610
I+ + + + GK + +H+KGW+ ++D
Sbjct: 30 IIGIENNREGKECYCVHFKGWNCRYD 55
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 557 NGKREFLIHWKGWSSKFDSWEP 622
+GK + +H+KGW+S++D P
Sbjct: 454 DGKDFYCVHFKGWNSRYDEKIP 475
>AF039049-3|AAB94251.2| 298|Caenorhabditis elegans Serpentine
receptor, class x protein66 protein.
Length = 298
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 274 AFNLLRIKNFLDLIFFFNDTFVFCRFIFLC 185
AFNL + K + +++ F TF C + +LC
Sbjct: 114 AFNLSKTKYMIFILWMFELTFALCFYEYLC 143
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 269 KGKLHYLIRWKGYSADSDTWEPEQT 343
K + YL++WK S D TWE + +
Sbjct: 502 KSQQDYLVKWKELSYDQATWERDDS 526
>AL032626-28|CAO82072.1| 337|Caenorhabditis elegans Hypothetical
protein Y37D8A.9b protein.
Length = 337
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 530 RIL*VHHKKNGKREFLIHWKGWSSKFDSWEP 622
+I + +GK + +H+KGW++++D P
Sbjct: 25 KITDIKTNSDGKELYCVHFKGWNNRYDEKIP 55
>AL032626-8|CAA21528.1| 335|Caenorhabditis elegans Hypothetical
protein Y37D8A.9a protein.
Length = 335
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 530 RIL*VHHKKNGKREFLIHWKGWSSKFDSWEP 622
+I + +GK + +H+KGW++++D P
Sbjct: 25 KITDIKTNSDGKELYCVHFKGWNNRYDEKIP 55
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 269 KGKLHYLIRWKGYSADSDTWEPEQT 343
K + YL++WK S D TWE + +
Sbjct: 502 KSQQDYLVKWKELSYDQATWERDDS 526
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 269 KGKLHYLIRWKGYSADSDTWEPEQT 343
K + YL++WK S + TWE + T
Sbjct: 514 KSQQDYLVKWKELSYEHATWERDDT 538
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 269 KGKLHYLIRWKGYSADSDTWEPEQT 343
K + YL++WK S + TWE + T
Sbjct: 514 KSQQDYLVKWKELSYEHATWERDDT 538
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 269 KGKLHYLIRWKGYSADSDTWEPEQT 343
K + YL++WK S + TWE + T
Sbjct: 514 KSQQDYLVKWKELSYEHATWERDDT 538
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,503,439
Number of Sequences: 27780
Number of extensions: 231940
Number of successful extensions: 657
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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