Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0164
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    44   1e-06
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   4.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   7.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.9  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 44.4 bits (100), Expect = 1e-06
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +2

Query: 479 KSQWDTSADENAEYXVERIL*VHHKKNGKREFLIHWKGWSSKFDSWEPESNL-NCSEL 649
           K+   T   E   + VE+IL    +  G   +LI WK W  K+++WEP SNL NCS++
Sbjct: 231 KNGMKTLLSETDIWEVEQIL-AKKEIKGVPTYLIKWKNWDLKYNTWEPISNLINCSDI 287



 Score = 40.7 bits (91), Expect = 2e-05
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 245 KILDSKKIKGKLHYLIRWKGYSADSDTWEP-EQTLSCPELIGKF 373
           +IL  K+IKG   YLI+WK +    +TWEP    ++C +++ +F
Sbjct: 248 QILAKKEIKGVPTYLIKWKNWDLKYNTWEPISNLINCSDILEEF 291


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 751 WICQREAVXSL 719
           WICQRE V S+
Sbjct: 169 WICQRERVASV 179


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 366  PISSGQDKVCSGSQVSLSAE 307
            P S+   +VC GSQ+ +S E
Sbjct: 1233 PRSNADYEVCIGSQIMVSPE 1252


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 531 VSYKYITRKMEKENF 575
           +SYK+ITR   +E F
Sbjct: 83  ISYKWITRSGTREQF 97


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 489 GTLVQMKMLNMXLSVSYKYITRKMEK 566
           GTL+   +  +   + YKYIT  ++K
Sbjct: 296 GTLIVGALAGLLSVLGYKYITPLIQK 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,588
Number of Sequences: 438
Number of extensions: 2583
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)