Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0162
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 247 1e-66
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 152 4e-38
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 152 4e-38
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 151 7e-38
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 151 7e-38
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 95 9e-21
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 44 2e-05
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 42 9e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 1e-04
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 3.4
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 4.5
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 26 4.5
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 26 6.0
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 25 7.9
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 247 bits (604), Expect = 1e-66
Identities = 120/126 (95%), Positives = 125/126 (99%)
Frame = +3
Query: 171 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 350
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 351 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 530
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLI
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 120
Query: 531 FAGKQL 548
FAGKQL
Sbjct: 121 FAGKQL 126
Score = 247 bits (604), Expect = 1e-66
Identities = 120/126 (95%), Positives = 125/126 (99%)
Frame = +3
Query: 171 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 350
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 351 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 530
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 196
Query: 531 FAGKQL 548
FAGKQL
Sbjct: 197 FAGKQL 202
Score = 247 bits (604), Expect = 1e-66
Identities = 120/126 (95%), Positives = 125/126 (99%)
Frame = +3
Query: 171 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 350
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 351 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 530
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 272
Query: 531 FAGKQL 548
FAGKQL
Sbjct: 273 FAGKQL 278
Score = 247 bits (604), Expect = 1e-66
Identities = 120/126 (95%), Positives = 125/126 (99%)
Frame = +3
Query: 171 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 350
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 351 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 530
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 348
Query: 531 FAGKQL 548
FAGKQL
Sbjct: 349 FAGKQL 354
Score = 152 bits (369), Expect = 4e-38
Identities = 73/77 (94%), Positives = 76/77 (98%)
Frame = +3
Query: 171 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 350
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 351 IQKESTLHLVLRLRGGM 401
IQKESTLHLVLRLRGG+
Sbjct: 365 IQKESTLHLVLRLRGGL 381
Score = 56.4 bits (130), Expect = 4e-09
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +1
Query: 550 EDGRTLSDYNIQKESTLHLVLRLRXGM 630
EDGRTLSDYNIQKESTLHLVLRLR GM
Sbjct: 51 EDGRTLSDYNIQKESTLHLVLRLRGGM 77
Score = 56.4 bits (130), Expect = 4e-09
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +1
Query: 550 EDGRTLSDYNIQKESTLHLVLRLRXGM 630
EDGRTLSDYNIQKESTLHLVLRLR GM
Sbjct: 127 EDGRTLSDYNIQKESTLHLVLRLRGGM 153
Score = 56.4 bits (130), Expect = 4e-09
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +1
Query: 550 EDGRTLSDYNIQKESTLHLVLRLRXGM 630
EDGRTLSDYNIQKESTLHLVLRLR GM
Sbjct: 203 EDGRTLSDYNIQKESTLHLVLRLRGGM 229
Score = 56.4 bits (130), Expect = 4e-09
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +1
Query: 550 EDGRTLSDYNIQKESTLHLVLRLRXGM 630
EDGRTLSDYNIQKESTLHLVLRLR GM
Sbjct: 279 EDGRTLSDYNIQKESTLHLVLRLRGGM 305
Score = 55.2 bits (127), Expect = 9e-09
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +1
Query: 550 EDGRTLSDYNIQKESTLHLVLRLRXGM 630
EDGRTLSDYNIQKESTLHLVLRLR G+
Sbjct: 355 EDGRTLSDYNIQKESTLHLVLRLRGGL 381
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 152 bits (369), Expect = 4e-38
Identities = 76/88 (86%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +3
Query: 171 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 350
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 351 IQKESTLHLVLRLRGG-MQIFVKTLTGK 431
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 99.5 bits (237), Expect = 4e-22
Identities = 47/50 (94%), Positives = 50/50 (100%)
Frame = +3
Query: 399 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 548
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL 50
Score = 54.8 bits (126), Expect = 1e-08
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +1
Query: 550 EDGRTLSDYNIQKESTLHLVLRLRXGM 630
EDGRTLSDYNIQKESTLHLVLRLR G+
Sbjct: 51 EDGRTLSDYNIQKESTLHLVLRLRGGI 77
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 152 bits (369), Expect = 4e-38
Identities = 76/88 (86%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +3
Query: 171 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 350
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 351 IQKESTLHLVLRLRGG-MQIFVKTLTGK 431
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 99.5 bits (237), Expect = 4e-22
Identities = 47/50 (94%), Positives = 50/50 (100%)
Frame = +3
Query: 399 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 548
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL 50
Score = 54.8 bits (126), Expect = 1e-08
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +1
Query: 550 EDGRTLSDYNIQKESTLHLVLRLRXGM 630
EDGRTLSDYNIQKESTLHLVLRLR G+
Sbjct: 51 EDGRTLSDYNIQKESTLHLVLRLRGGI 77
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 151 bits (367), Expect = 7e-38
Identities = 73/76 (96%), Positives = 75/76 (98%)
Frame = +3
Query: 171 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 350
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 351 IQKESTLHLVLRLRGG 398
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 99.5 bits (237), Expect = 4e-22
Identities = 47/50 (94%), Positives = 50/50 (100%)
Frame = +3
Query: 399 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 548
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL 50
Score = 54.4 bits (125), Expect = 1e-08
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = +1
Query: 550 EDGRTLSDYNIQKESTLHLVLRLRXG 627
EDGRTLSDYNIQKESTLHLVLRLR G
Sbjct: 51 EDGRTLSDYNIQKESTLHLVLRLRGG 76
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 151 bits (367), Expect = 7e-38
Identities = 73/76 (96%), Positives = 75/76 (98%)
Frame = +3
Query: 171 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 350
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 351 IQKESTLHLVLRLRGG 398
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 99.5 bits (237), Expect = 4e-22
Identities = 47/50 (94%), Positives = 50/50 (100%)
Frame = +3
Query: 399 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 548
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL 50
Score = 54.4 bits (125), Expect = 1e-08
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = +1
Query: 550 EDGRTLSDYNIQKESTLHLVLRLRXG 627
EDGRTLSDYNIQKESTLHLVLRLR G
Sbjct: 51 EDGRTLSDYNIQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 95.1 bits (226), Expect = 9e-21
Identities = 41/76 (53%), Positives = 57/76 (75%)
Frame = +3
Query: 171 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 350
M I VKTLTGK I L+++P+D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 351 IQKESTLHLVLRLRGG 398
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
Score = 67.3 bits (157), Expect = 2e-12
Identities = 28/50 (56%), Positives = 40/50 (80%)
Frame = +3
Query: 399 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 548
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQM 50
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 553 DGRTLSDYNIQKESTLHLVLRLRXG 627
D + Y+++ S LHLVL LR G
Sbjct: 52 DDKNAESYHLEGGSVLHLVLALRGG 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +3
Query: 198 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 371
GK LE+EP++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
Score = 33.1 bits (72), Expect = 0.040
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 426 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 548
GK LE+E ++T +K ++ +PP++Q++I G QL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQL 50
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 41.9 bits (94), Expect = 9e-05
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +3
Query: 171 MQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 347
M + K L + + +DT I +K KIQ ++ ++Q+LI++G+ L D +T+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 348 NIQKE 362
NI+++
Sbjct: 61 NIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +3
Query: 171 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 350
+ + +K + + V+ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 351 IQKESTLHLVLRL 389
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +3
Query: 399 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 548
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVL 53
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +3
Query: 174 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 347
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 348 NIQKESTLHLVLRLRGGMQIFVKTLTGKTI 437
+ T HLV+ + + + T ++
Sbjct: 65 DATDLVTFHLVIAVFNSTSTTLPSATSSSV 94
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/82 (25%), Positives = 34/82 (41%)
Frame = +3
Query: 402 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLGRRTHLVRLQY 581
+I V T+ K +V + T+ +K I P D+ +LI AG+ L T L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 582 SKGIYTPFSVTSTXRNVISHTI 647
F + N S T+
Sbjct: 65 DATDLVTFHLVIAVFNSTSTTL 86
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 26.2 bits (55), Expect = 4.5
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = -3
Query: 164 LEDTIISLCQLYVEQL*AQNTIT 96
+EDT++S+C++ +E ++N +T
Sbjct: 50 IEDTVLSICEVTLENKASENALT 72
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 529 SLQASSWEDGRTLSDYNIQKESTLHLVLRLR 621
+L S+ DG TL++ N HL++RL+
Sbjct: 424 ALSLSTNSDGETLNEINTNNPEREHLIVRLK 454
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +2
Query: 320 GRRTHVVRLQHSKRIHTASCTASSWRHADLRENSDRKDHHFGSRSFGHN*ER 475
G R V L ++H + A+ +EN HHF R F + +R
Sbjct: 143 GNRKIRVLLDQGNQMHRPVAPETKAEEAEHQENEKHHRHHFRLRKFANAIDR 194
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 395 STKTQYKMQCGFFLNV 348
S +TQYKM+C +NV
Sbjct: 298 SLETQYKMECAVLMNV 313
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,127
Number of Sequences: 5004
Number of extensions: 58500
Number of successful extensions: 198
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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