Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0162
         (703 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    254   2e-69
DQ004399-1|AAY21238.1|  847|Anopheles gambiae lysozyme c-6 protein.    24   5.3  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   9.3  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  254 bits (622), Expect = 2e-69
 Identities = 125/126 (99%), Positives = 125/126 (99%)
 Frame = +3

Query: 171 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 350
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 351 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 530
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 531 FAGKQL 548
           FAGKQL
Sbjct: 121 FAGKQL 126



 Score =  254 bits (622), Expect = 2e-69
 Identities = 125/126 (99%), Positives = 125/126 (99%)
 Frame = +3

Query: 171 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 350
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 351 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 530
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query: 531 FAGKQL 548
           FAGKQL
Sbjct: 197 FAGKQL 202



 Score =  157 bits (381), Expect = 3e-40
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 171 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 350
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 351 IQKESTLHLVLRLRGG 398
           IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228



 Score = 56.4 bits (130), Expect = 8e-10
 Identities = 26/27 (96%), Positives = 26/27 (96%)
 Frame = +1

Query: 550 EDGRTLSDYNIQKESTLHLVLRLRXGM 630
           EDGRTLSDYNIQKESTLHLVLRLR GM
Sbjct: 51  EDGRTLSDYNIQKESTLHLVLRLRGGM 77



 Score = 56.4 bits (130), Expect = 8e-10
 Identities = 26/27 (96%), Positives = 26/27 (96%)
 Frame = +1

Query: 550 EDGRTLSDYNIQKESTLHLVLRLRXGM 630
           EDGRTLSDYNIQKESTLHLVLRLR GM
Sbjct: 127 EDGRTLSDYNIQKESTLHLVLRLRGGM 153



 Score = 54.4 bits (125), Expect = 3e-09
 Identities = 25/26 (96%), Positives = 25/26 (96%)
 Frame = +1

Query: 550 EDGRTLSDYNIQKESTLHLVLRLRXG 627
           EDGRTLSDYNIQKESTLHLVLRLR G
Sbjct: 203 EDGRTLSDYNIQKESTLHLVLRLRGG 228


>DQ004399-1|AAY21238.1|  847|Anopheles gambiae lysozyme c-6 protein.
          Length = 847

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 470 LNCVRSFYFQSDGLSGQSFH 411
           + CVR+ Y +   +SG  FH
Sbjct: 267 VRCVRTIYDEHQRISGNGFH 286


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 267 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 389
           K   P  Q R IF G+ +++   +    +Q++   HL++ L
Sbjct: 588 KREFPDLQNRTIFTGRFVKELYDVRSGCVQEQDGTHLLMNL 628


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 706,986
Number of Sequences: 2352
Number of extensions: 14002
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71504505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)