Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0162
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              29   0.043
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.9  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   6.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 29.1 bits (62), Expect = 0.043
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 456 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLGRRTHLVRLQYSKGIYTPFSVTST 620
           +DT+   K KI  K  I PD + L+   KQ    T +V+   S G+   F V +T
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQETGVTLVVQEISSDGLKFAFDVKTT 786



 Score = 26.6 bits (56), Expect = 0.23
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 228 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 338
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +2

Query: 116 IIVRHTTDKAKLLYLLDHHANLCEDSNWQDHYI 214
           ++  HT+D+ K   +  ++ N    + ++D+YI
Sbjct: 118 LVPNHTSDQHKWFQMSINNTNNNNTNKYKDYYI 150


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 293 LLIRRNSFFVLDLRLHILNC 234
           LLIR  SF +L+  L   NC
Sbjct: 137 LLIRFKSFSLLNFNLLFFNC 156



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 521 LLIRRNSFFVLDLRLHVLNC 462
           LLIR  SF +L+  L   NC
Sbjct: 137 LLIRFKSFSLLNFNLLFFNC 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,483
Number of Sequences: 438
Number of extensions: 3868
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)